Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003504.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq16 147 4e-32 seq13 136 6e-29 seq11 123 4e-25 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 235/336 (70%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1574 CTTTAATTTGAACCGGCTTTCCATATTTGCAGTTGGATTGCCAGTCTCTTTGGGCCCCAA 1633 |||| || |||||||| |||| || ||||| || | ||||||||||||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1634 TCAATTCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGACTGATGTCATCGATGACGTTAT 1693 ||||| ||||||| | |||| |||| || | | || ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGT------GTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1694 ACTCAACCTCGTTAGAGTACACTGAAGAATTGAAATCCAGGTGTCCACTAAGATAATTGT 1753 | || || ||||||||| | || | || ||| || || | | ||||| | |||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1754 GTGGTCCTAATGCACGAGCCCACATGGTTTTTCCGGTACGTGAACCACCTTCGACGATGA 1813 || ||| |||| | |||||||| || |||||||| | |||| ||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1814 T--ACTAATAGGTCTCTCCGCCCGCGCAGCGGCACCCCTTCCGAAATAGTCGTCCGCCCA 1871 | ||| ||||||| | || | |||| | | ||||| || || ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1872 CTCTTGCATCTCATCTGGAACGAACGTGAAGGAAGA 1907 | |||||| | | ||| ||| |||||| ||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 136 bits (150), Expect = 6e-29 Identities = 247/359 (69%), Gaps = 12/359 (3%) Strand=Plus/Plus Query 1538 CTCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTTCCAT 1597 ||||||| ||||| || | ||||| |||||| || ||||| | || ||||| | | Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1598 ATTTGCAGTTGGATTGCCAGTCTCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCT 1657 |||||||||| || ||||| | | ||| || ||||| || |||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1658 TTAGGTATTGCGGACTGATGTCATCGATGACGTTATACTCAACCTCGTTAGAGTACAC-- 1715 | | |||||| || ||||||||||||| ||| || ||||| ||||| ||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1716 TGAAGAATTGAAATCCAGGTGTCCACTAAGATAATTGTGTGGTCCTAATGCACGAGCCCA 1775 | |||| |||| || |||| | || || ||| ||| || | | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1776 CATGGTTTTTCCGGTACGTGAACCACCTTCGACGATGAT--ACTAATAGGTCTCTCCGCC 1833 ||| ||||| || || | ||| ||| ||| | ||| || ||| | |||||| || | Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1834 CGCGCAGCGGCACCCCTTCCGAAATAGTCGTCCGCCCACTCTTGCATCTCATCTGGAAC 1892 ||||||||||| ||| || || || ||||| | ||||| || ||||| || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTAC 89851549 >seq11 Length=168460249 Score = 123 bits (136), Expect = 4e-25 Identities = 245/361 (68%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 1534 CCCTCTCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACCGGCTTT 1593 ||| ||||||| ||||| |||| ||||| |||||| || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1594 CCATATTTGCAGTTGGATTGCCAGTCTCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTT 1653 || |||||||||| || ||||| | || ||| || ||||| || |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1654 AGCTTTAGGTATTGCGGACTGATGTCATCGATGACGTTATACTCAACCTCGTTAGAGTAC 1713 || | | |||||| || ||||||||||||| ||| || ||| | | ||| ||| | Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1714 ACTGAAGAATTGAAATCCAGGTGTCCACTAAGATAATTGTGTGGTCCTAATGCACGAGCC 1773 ||| ||| |||| || |||| | || || ||| ||| || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1774 CACATGGTTTTTCCGGTACGTGAACCACCTTCGACGATGAT--ACTAATAGGTCTCTCCG 1831 ||||| ||||| | || | ||| ||||| | ||| | ||| | |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1832 CCCGCGCAGCGGCACCCCTTCCGAAATAGTCGTCCGCCCACTCTTGCATCTCATCTGGAA 1891 |||||||||||| || || || || ||||| ||||||| || ||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1892 C 1892 | Sbjct 165527257 C 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8220666535312