Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003664.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq16 178 2e-41 seq11 143 4e-31 seq13 140 5e-30 >seq16 Length=188620566 Score = 178 bits (196), Expect = 2e-41 Identities = 242/336 (72%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1591 CTTTAATTTGAACCGGCTTTCCGTACTTGCAGTTTGATTGCCAATCCCTTTGGGCCCCAA 1650 |||| || |||||||| |||| ||||||||| |||| |||||| || ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1651 TCAATTCTTTCCAGTGCTTTAGTTTTAGATAATGCGGTGCGACATCATCAATGACGTTAT 1710 ||||| |||||||| ||||| | | || || || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTG------TTTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1711 ACTGCACATCGTTTGAGTAGACCTTTGAATTGAAATCGAGGTGACCACTCAAGTAATTAT 1770 | | ||||||||| ||| | ||| | | ||| || || | | |||||| || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1771 GGGACCCCAATGTACGTGCCCACATTGCCTTCCCCGTCCTTGAATCACCCTCGATTATTA 1830 | ||||||| | ||||||||||| ||| || || ||||||||||| || ||||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1831 T--ACTGATAGGTCTCTCCGGCCGCGCAGCGGCATCTCTCCCGAAATAATCATTGACCCA 1888 | |||| ||||||| || || | |||| || |||||||||| |||| Sbjct 2249099 TTGACTG--AGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1889 GTCTTGCATCTCGACAGGAACGTTAGTGAACGATGA 1924 | |||||| | || ||||| ||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq11 Length=168460249 Score = 143 bits (158), Expect = 4e-31 Identities = 328/489 (67%), Gaps = 11/489 (2%) Strand=Plus/Minus Query 1551 CCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACCGGCTTT 1610 ||| | || || ||||| |||| ||| ||| || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1611 CCGTACTTGCAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTT 1670 ||||| ||||||| || ||||||| | ||| || ||||| || |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1671 AGTTTTAGATAATGCGGTGCGACATCATCAATGACGTTATACTGCACATCGTTTGAGTAG 1730 | || || || |||| | ||||| |||| ||| || | | | ||||||| || Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1731 ACCTTTGAATTGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGTACGTGCC 1790 || ||| ||| || | ||||||| | ||| ||||| ||||| | | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1791 CACATTGCCTTCCCCGTCCTTGAATCACCCTCGATTATTATACTGA--TAGGTCTCTCCG 1848 ||||||| || | ||||| |||| ||| | || ||| | ||| | |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCG 165527318 Query 1849 GCCGCGCAGCGGCATCTCTCCCGAAATAATCATTGACCCAGTCTTGCATCTCGACAGGAA 1908 ||||||||||||| | | || || || || |||| ||||||| || | || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1909 CGTTAGTGAACGATGAGAGGGGAAACGGAGGAACCCAAGGTTCTGGAGCCTTAACGAAAA 1968 | |||||||| ||| | || || ||| ||||| || ||| || | | | | Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGA 165527198 Query 1969 TACGCTCTAGATTAGATTTAATATTATGATGTTGAAGCACGAAATCTTTGGGTTGTTCCT 2028 | || || || | || || || ||||| || | || || ||| |||||||||| | Sbjct 165527197 CTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCAT 165527138 Query 2029 CTCTTAATA 2037 ||| ||||| Sbjct 165527137 CTC-TAATA 165527130 >seq13 Length=197258317 Score = 140 bits (154), Expect = 5e-30 Identities = 253/366 (69%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1557 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACCGGCTTTCCGTAC 1616 || || ||||| || | ||| ||| || || ||||| | || ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1617 TTGCAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGTTTT 1676 |||||||| || ||||||| ||| || ||||| || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1677 AGATAATGCGGTGCGACATCATCAATGACGTTATACTGCACATCGTTTGAGTAGACCTTT 1736 || || || |||| | ||||| |||| ||| || | || ||||||||| |||| ||| Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1737 GAAT--TGAAATCGAGGTGACCACTCAAGTAATTATGGGACCCCAATGTACGTGCCCACA 1794 | ||| || | ||||||| | ||| ||||| ||||| | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1795 TTGCCTTCCCCGTCCTTGAATCACCCTCGATTATTAT--ACTGATAGGTCTCTCCGGCCG 1852 ||| || || ||||| ||||||| || || ||||| ||| | |||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1853 CGCAGCGGCATCTCTCCCGAAATAATCATTGACCCAGTCTTGCATCTCGACAGGAACGTT 1912 ||||||||| | | || || || || |||| | ||||| || | || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1913 AGTGAA 1918 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 87.8 bits (96), Expect = 3e-14 Identities = 229/345 (66%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 1695 TCATCAATGACGTTATACTGCACATCGTTTGAGTAGACCTTTGAATTGAAATCGAGGTGA 1754 ||||| |||| ||| || | | | ||||||| |||| ||| |||| || | || Sbjct 172133906 TCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGAGGTCCAATTG- 172133964 Query 1755 CCACTCAAGTAATTATGGGACCCCAATGTACGTGCCCACATTGCCTTCCCCGTCCTTGAA 1814 |||| | ||| ||||| |||| | | ||||||||||| || || || || ||| Sbjct 172133965 CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGAA 172134024 Query 1815 TCACCCTCGATTATTATACTGA--TAGGTCTCTCCGGCCGCGCAGCGGCATCTCTCCCGA 1872 | ||| || || || |||||| | |||||| ||||||| |||||||| | | | || | Sbjct 172134025 TTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTTGTATACCAA 172134082 Query 1873 AATAATCATTGACCCAGTCTTGCATCTCGACAGGAACGTTAGTGAACGATGAGAGGGGAA 1932 | || || |||| ||||||| || | | || |||||||| ||| | || | Sbjct 172134083 AGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAGCTTGATAACGGGA 172134142 Query 1933 ACGGAGGAACCCAAGGTTCTGGAGCCTTAACGAAAATACGCTCTAGATTAGATTTAATAT 1992 | ||| ||||| || ||| || | | | | | || || || | || || | Sbjct 172134143 ATGGACATACCCATGGAGCTGTAGGTATTTCATAGACTCTATCCAGGTTGAAGTTGATGT 172134202 Query 1993 TATGATGTTGAAGCACGAAATCTTTGGGTTGTTCCTCTCTTAATA 2037 | ||||| || | | || ||| |||||||||| |||| ||||| Sbjct 172134203 TGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATCTC-TAATA 172134246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8281465548224