Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003722.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq16 141 2e-30 seq13 114 2e-22 seq11 107 3e-20 >seq16 Length=188620566 Score = 141 bits (156), Expect = 2e-30 Identities = 194/267 (73%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1716 CTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCA 1775 |||| || ||||| || || | ||||||| || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1776 TGAATTCTTTAAAGTGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTATA--CCA 1833 ||||| || |||| |||| | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1834 AGCATCATTATTGTACACCTTAGGGCTTAGATCTAAATGACCACACAAGTAATTATGTGG 1893 |||| ||| | | ||| |||| | | ||||||| ||||| || ||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1894 TCCCAATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACCCTCTATGACTAT--A 1951 ||||||||| || |||||||| ||||| || ||||| ||||| || || | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1952 CTCATGGGTCTCAATGGCCGCGCAGCG 1978 || | ||||||||||| || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 114 bits (126), Expect = 2e-22 Identities = 208/302 (69%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 1681 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1740 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1741 CTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA 1800 ||| || ||||| | | ||| || || || || ||||| ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1801 GTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTACACCTTAGGG-C 1859 || || || |||||| |||| ||| || | | || || | | || || | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1860 TT-AGATCTAAATGACCACACAAGTAATTATGTGGTCCCAATGACCTGGCCCACATCGTC 1918 || || || | ||||||||| | ||| |||||| |||||| || || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1919 TTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGGGTCTCAATGGCCGCGCAGCG 1978 || ||||| || |||| ||||||| ||| | | ||||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1979 GC 1980 || Sbjct 89851500 GC 89851501 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 206/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1681 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1740 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1741 CTTG--GTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGG 1798 ||| ||| || |||| | || ||| || || || || ||||| ||||| | | | Sbjct 165527544 TTTGCAGTAAGACT--GCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAG 165527487 Query 1799 TAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTACACCTTAGGG 1858 || || || || |||||| |||| ||| || ||| | || | | || || | Sbjct 165527486 TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1859 CTTAGATCTAAATGACCACACAAGTAATTATGTGGTCCCAATGACCTGGCCCACATCGTC 1918 | | || | ||||||||| | ||| |||||| |||||| || || |||||||| || Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1919 TTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGGGTCTCAATGGCCGCGCAGCG 1978 || | ||| || | ||| | ||||| | | | | ||||||| |||||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCG 165527307 Query 1979 GC 1980 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668659262032