Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003803.1 Length=2800 Score E Sequences producing significant alignments: (Bits) Value seq13 122 2e-24 >seq13 Length=197258317 Score = 122 bits (134), Expect = 2e-24 Identities = 210/302 (70%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1730 TCCTGGATTGCATAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTA 1789 |||||| |||||||| | ||| || || ||||| ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1790 CTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTGAGGTA 1849 ||| || ||||| | ||| || || || || ||||| ||||||||| ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1850 ATGGGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTGCTGTAAACCTTTGGAC- 1908 || || | |||||| |||| |||||| ||||||| | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1909 -TGAGATCCAAATGTCCACATAAGTAGTTGTGTGGTCCCAGAGATCGGGCCCACATCGTC 1967 |||| |||| ||| ||||||| |||||| ||| ||||| ||||| |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1968 TTCCCTGTCCTACTATCGCCCTCGATGACGAT--ACTACTCGGTCTCCATGGCCGCGCAG 2025 || |||||||| ||| | || |||| || ||| | |||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 2026 CG 2027 || Sbjct 89851498 CG 89851499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8847852127800