Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003825.1 Length=2861 Score E Sequences producing significant alignments: (Bits) Value seq13 141 2e-30 seq11 138 2e-29 seq16 136 7e-29 >seq13 Length=197258317 Score = 141 bits (156), Expect = 2e-30 Identities = 264/385 (69%), Gaps = 12/385 (3%) Strand=Plus/Plus Query 1831 CCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTAATTTGAACTGGCTTTCCATAT 1890 || |||||||| || | |||| ||| ||||| ||||| | || |||||| | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1891 TTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGCTCTTTCCAGTGCTTTAACTTT 1950 || ||||| |||||||| | | || || ||||| | ||||||||||||||| || | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1951 AAATAGTGCGGTGTGACGTCATCAATGACGTTATA--CAAGGCACTATTTGAATACACTC 2008 || |||| | |||||| |||| ||| || ||| | | | ||| || | Sbjct 89851321 ------TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 2009 TGCTGTTAAAATCTAAGTGGCCGGATAAATAATTATGTGGGCCCAAGCTCCTAGCCCACA 2068 | | || | || | || || ||| || |||||| ||||| || ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 2069 TTGTCTTGCCGGTCCTAGACTCACCCTCAATTATAAT--ACTTTTATATCTCATAGGCCG 2126 |||| || || ||||| || |||| || || || || ||||| |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCG 89851492 Query 2127 CGCAGCGGCACTAACTCCAAAATAATCATCCGCCCATTCTTGCATATCTTCAGGAACGTT 2186 ||||||||| | |||||| || ||| ||||||| ||||| ||||| || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 2187 AGTAAATGAAGATAATTGAAACGGA 2211 ||| || |||||| | || ||| Sbjct 89851553 AGTGAAGCTTGATAATGGGAATGGA 89851577 Score = 96.9 bits (106), Expect = 6e-17 Identities = 183/265 (69%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 2467 CTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTGGTTGGG-GATACCAG 2525 ||||||||||| |||||||| ||||| || | ||| | ||||| ||| || Sbjct 172134403 CTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTG-AG 172134461 Query 2526 GTCGAAGAATCGTTGATTTTTGCAGTTGAATTTCCCTTCGAATTGTATAAGCACATGGAG 2585 ||| ||||||| | |||||| || ||||||||| ||| | || || | ||||| || Sbjct 172134462 GTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAG 172134521 Query 2586 ATGAGGTTCCCCATTTTCGTGTAGCTCTCT--AGCTACTTTTATGTATTTTTTATT--TG 2641 |||||| | | | |||||| || ||| | || || ||| ||| || || || Sbjct 172134522 ATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGATCGCTG 172134581 Query 2642 TTGGTGTTTGTAGCCTTTGAAGTTGGTCGAGAGCTTCTTCTTTGGATAAAGAACAATTGG 2701 || || |||| || ||||| || ||| | ||||||||||| | | || || | Sbjct 172134582 AAGGAATTGGTAGAACTTTCAGTTGTTCAAGATAATATTCTTTGGATACATAGCATTTTG 172134641 Query 2702 GATATGTGAGGAAATAGTTCTTGGC 2726 | ||||||| ||| ||||||||||| Sbjct 172134642 GGTATGTGATGAAGTAGTTCTTGGC 172134666 Score = 78.8 bits (86), Expect = 2e-11 Identities = 168/248 (68%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 1947 CTTTAAATAGTGCGGTGTGACGTCATCAATGACGTTATACAAGGCACTATTTGAATACAC 2006 ||| || || || |||| | |||||| |||| ||| || || | ||||| | || Sbjct 172133884 CTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 172133943 Query 2007 TCTGCTGTTAAAATCTAAGTGGCCGGATAAATAATTATGTGGGCCCAAGCTCCTAGCCCA 2066 | | |||| | || || || || ||| || |||||| |||| | || ||||| Sbjct 172133944 TTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCA 172134002 Query 2067 CATTGTCTTGCCGGTCCTAGACTCACCCTCAATTATAATACT--TTTATATCTCATAGGC 2124 |||||| ||||| || || || | ||| || || || |||| || ||||| ||| Sbjct 172134003 CATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGGC 172134060 Query 2125 CGCGCAGCGGCACTAACTCCAAAATAATCATCCGCCCATTCTTGCATATCTTCAGGAACG 2184 || |||||||| | ||||| || ||| ||||||||||||| ||||| | || Sbjct 172134061 CGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACA 172134120 Query 2185 TTAGTAAA 2192 ||||| || Sbjct 172134121 TTAGTGAA 172134128 >seq11 Length=168460249 Score = 138 bits (152), Expect = 2e-29 Identities = 250/364 (69%), Gaps = 10/364 (3%) Strand=Plus/Minus Query 1831 CCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTAATTTGAACTGGCTTTCCATAT 1890 || |||||||| || | |||| ||| ||||| ||||| | || |||||| || ||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1891 TTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGCTCTTTCCAGTGCTTTAACTTT 1950 || |||| |||||||| | || || || ||||| | |||||||||||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG------CATG 165527490 Query 1951 AAATAGTGCGGTGTGACGTCATCAATGACGTTATACAAGGCACTATTTGAATACACTCTG 2010 || || || |||| | |||||| |||| ||| || || | ||||| | ||| | Sbjct 165527489 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 2011 CTGTTAAAATCTAAGTGGCCGGATAAATAATTATGTGGGCCCAAGCTCCTAGCCCACATT 2070 |||| || | || || ||| || |||||| ||||| || ||||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 2071 GTCTTGCCGGTCCTAGACTCACCCTCAATTATAAT--ACTTTTATATCTCATAGGCCGCG 2128 || |||| ||||| || | ||| | || || | ||||| |||||| ||||||| Sbjct 165527369 GTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCG 165527312 Query 2129 CAGCGGCACTAACTCCAAAATAATCATCCGCCCATTCTTGCATATCTTCAGGAACGTTAG 2188 ||||||| | ||||| || ||| ||||||||||||| ||||| || || |||| Sbjct 165527311 CAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTACATTAG 165527252 Query 2189 TAAA 2192 | || Sbjct 165527251 TGAA 165527248 >seq16 Length=188620566 Score = 136 bits (150), Expect = 7e-29 Identities = 235/337 (70%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 1865 CTTTAATTTGAACTGGCTTTCCATATTTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAA 1924 |||| || ||||| || |||| || || || |||| ||||||||||| || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1925 TCAGCTCTTTCCAGTGCTTTAACTTTAAATAGTGCGGTGTGACGTCATCAATGACGTTAT 1984 | || |||||||| ||||| | || ||| ||| | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTG-GGT-TAACGTTATCAATAACGTTAT 2249220 Query 1985 ACAAGGCACTATTTGAATACACTCTGCTGTTAAAATCTAAGTGGCCGGATAAATAATTAT 2044 | || || || | || | || || ||||| | || ||||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 2045 GTGGGCCCAAGCTCCTAGCCCACATTGTCTTGCCGGTCCTAGACTCACCCTCAATTATAA 2104 || ||||| || |||||||||||||| ||||| || || ||||| |||||||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 2105 TACTTTTATATCTCATAGGCCGCGCAGCGGCACTAAC---TCCAAAATAATCATCCGCCC 2161 | | | ||||| || || | |||| || | | |||||||||||| |||| Sbjct 2249099 TTGACTGAGGTCTCAATGGGCGTGAAGCG---CTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 2162 ATTCTTGCATATCTTCAGGAACGTTAGTAAATGAAGA 2198 ||| ||||||| ||| || ||||| || || ||||| Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9043048865520