Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003828.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-17 seq11 98.7 2e-17 seq16 95.1 2e-16 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 203/301 (67%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1701 CCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATAC 1760 ||||| |||||||| | ||| || || ||||||||||| | || | |||||| | || Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1761 TTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTTTTAAATAA 1820 || ||| ||||||| | ||| || || ||||| ||||| |||| || || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1821 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTT--TGAC 1878 || || | |||||| |||| ||| || | | | || | | |||||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1879 TGAGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCACGTTGTCT 1938 ||||||| | ||| || || | || |||||| || || || | |||||| |||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1939 TTCCTGTCCGGCTGTCACCCTCAATCACTATACTCACCGGTCTCCAAGGCCGCGCAGCGG 1998 | ||||||| | |||| || || | ||| | |||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1999 C 1999 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1701 CCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATAC 1760 ||||| |||||||| | ||| || || ||||||||||| | || | |||||||| || Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1761 TTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTTTTAAATAA 1820 || || ||||||| || ||| || || ||||| ||||| |||| | || || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1821 TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTTTTGACTG 1880 || || | |||||| |||| ||| || ||| || || | | ||||||| || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1881 AGGTCAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCACGTTGTCTTT 1940 |||| | ||| || || | || |||||| || || || | |||||| |||| || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1941 CCTGTCCGGCTGTCACCCTCAATCACTATACTCACCGGTCTCCAAGGCCGCGCAGCGGC 1999 | ||||| | | ||| | || | | | | |||||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 >seq16 Length=188620566 Score = 95.1 bits (104), Expect = 2e-16 Identities = 165/235 (70%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 1767 TTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTGTTTTAAATAATGCGGG 1826 |||||| |||| |||||||| || || | ||||| || ||||||||||| | || ||| Sbjct 2249300 TTGCTT-GCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAGTGTTTTAAACATTGTGGG 2249242 Query 1827 TCGACGTCATCAATGACGTTATA--CCAAGCATTATTGCTGTATACTTTTTGACTGAGGT 1884 | |||| |||||| |||||||| ||| ||| || | | || | || | | || Sbjct 2249241 TTAACGTTATCAATAACGTTATATTCCA--CATCGTTAGAGAAAACCGTAGGATTCAAGT 2249184 Query 1885 CAAGATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCACGTTGTCTTTCCTG 1944 | | || || | |||||||||||| || ||||| | |||||| |||||||||| | Sbjct 2249183 CTAAATAACCACTTAAATAATTATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGG 2249124 Query 1945 TCCGGCTGTCACCCTCAATCACTAT--ACTCACCGGTCTCCAAGGCCGCGCAGCG 1997 | | ||||| ||||| | ||| ||| | |||||| | || || | |||| Sbjct 2249123 TTCTTGAATCACCTTCAATTATTATTGACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8761453571760