Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003830.1 Length=2634 Score E Sequences producing significant alignments: (Bits) Value seq16 183 5e-43 seq13 176 7e-41 seq11 163 5e-37 >seq16 Length=188620566 Score = 183 bits (202), Expect = 5e-43 Identities = 244/336 (73%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1610 CTTTAATTTGAACTGGCTTACCGTACTTGCAATTGGATTGCCAGTCCTTCTGGGCCCCCA 1669 |||| || ||||| || || | ||||||||| || | ||||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1670 GAAGTTCCTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1729 | | |||||||||||| ||||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1730 ACTCCACTTCGTTCGAGTAGACCTTTGGGTTGAAGTCCAGATGACCACTTAGGTAATTAT 1789 | ||||| ||||| ||| | ||| | || || ||||| | || |||||||| ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1790 GTGGGCCTAATGCCCTAGCCCACATCGTCTTCCCTGTCCTCGAATCACCTTCCACGATGA 1849 || || |||| || |||||||| ||||| || || || ||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1850 T--ACTAATAGGTCTTTCCGGCCGCGCAGCGGAACCTCTTCCAAAATAATCATCCGCCCA 1907 | ||| |||||| || || | |||| | | |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1908 CTCTTGCATCTCGTCTGGAACGTTAGTGAACGAAGA 1943 | |||||| | | ||| ||||| ||||| ||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 176 bits (194), Expect = 7e-41 Identities = 260/366 (71%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1576 CCAGGATTGCAAAGCACGATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTTACCGTAC 1635 || || ||||| || | ||||| ||| || |||||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1636 TTGCAATTGGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCCTTCCAGTGCTTTAACTTT 1695 ||||| || || ||||| | | || || || | || || ||||||||||| || | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1696 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAGTAGACCTTT 1755 || |||| | |||||| |||| ||| || || || ||||| ||| |||| ||| Sbjct 89851321 ------TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1756 GGGT--TGAAGTCCAGATGACCACTTAGGTAATTATGTGGGCCTAATGCCCTAGCCCACA 1813 | ||| ||||| |||||||| || ||| |||||| || || | || ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1814 TCGTCTTCCCTGTCCTCGAATCACCTTCCACGATGAT--ACTAATAGGTCTTTCCGGCCG 1871 | || || |||||||| ||||||| ||| | ||| || ||| | ||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1872 CGCAGCGGAACCTCTTCCAAAATAATCATCCGCCCACTCTTGCATCTCGTCTGGAACGTT 1931 |||||||| | |||||| || ||| ||||| | ||||| || ||||| || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1932 AGTGAA 1937 |||||| Sbjct 89851553 AGTGAA 89851558 >seq11 Length=168460249 Score = 163 bits (180), Expect = 5e-37 Identities = 262/373 (70%), Gaps = 14/373 (4%) Strand=Plus/Minus Query 1569 ACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTT 1628 |||| | || || ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1629 ACCGTACTTGCAATTGGATTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCCTTCCAGTGC 1686 ||||| ||||| | || ||||| | ||| || || || | || || ||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGC 165527493 Query 1687 TTTAACTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAG 1746 | || | | || |||| | |||||| |||| ||| || || | | ||| ||| Sbjct 165527492 ATGAAGTAT------TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1747 TAGACCTTTGGGTTGAAGTCCAGATGACCACTTAGGTAATTATGTGGGCCTAATGCCCTA 1806 |||| ||| |||| ||||| |||||||| || ||| |||||| || || | || Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1807 GCCCACATCGTCTTCCCTGTCCTCGAATCACCTTCCACGATGAT--ACTAATAGGTCTTT 1864 |||||||| || || | |||||| |||| ||||| | ||| | ||| | ||||| Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCA 165527321 Query 1865 CCGGCCGCGCAGCGGAACCTCTTCCAAAATAATCATCCGCCCACTCTTGCATCTCGTCTG 1924 |||||||||||||| | ||||| || ||| ||||| ||||||| || |||| Sbjct 165527320 TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 1925 GAACGTTAGTGAA 1937 | || |||||||| Sbjct 165527260 GTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8319864924800