Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003856.1 Length=2607 Score E Sequences producing significant alignments: (Bits) Value seq16 215 8e-53 seq13 176 7e-41 seq11 158 2e-35 >seq16 Length=188620566 Score = 215 bits (238), Expect = 8e-53 Identities = 256/340 (75%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 1590 CTTTAATTTGAACTGGCTTTCCATACTTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAA 1649 |||| || ||||| || |||| ||||| || |||| ||||||||| | || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1650 TTAATTCTTTCCAATGCTTTAATTTCAAATAGCTAGGGCTGACATCATCAATGACGTTAT 1709 |||||| ||||| || ||||| | || | ||| | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGT--GGGTTAACGTTATCAATAACGTTAT 2249220 Query 1710 ATTCTACGTCATTCGAATAGACCCTAGAATTGAAATCCAGATGACCTGACAGATAATTAT 1769 |||| || || || || | ||| ||| ||| || || | || ||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1770 GCTTTCCTAATGATCTTGCCCACATTGTCTTGCCGGTTCTTGAATCACCTTCGACGATGA 1829 | |||| ||||||||||||||||||||||| |||||||||||||||||||| | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1830 T--ACTAATAGGTCTCTCTGGCCGCGCAGCGGCACTC--ATGCCAAAATAATTGTCTGCC 1885 | ||| ||||||| ||| || | ||| || || ||| |||||||| |||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATG-AAAAATAATCATCTGCC 2249044 Query 1886 CATTCCTGCATCTCTTCTGGTACGTTAGTGAAAGAAGACA 1925 |||| ||||| ||| ||||||||| ||||||||||||| Sbjct 2249043 CATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACA 2249004 >seq13 Length=197258317 Score = 176 bits (194), Expect = 7e-41 Identities = 262/366 (72%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1556 CCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATAC 1615 || || |||||||| | ||||| ||| ||||| ||||| | || |||||| | || Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1616 TTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTTAATTTC 1675 || ||||| |||||||| | || || || ||||| || |||||||| ||||| || | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT-- 89851318 Query 1676 AAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAGACCCTA 1735 || | | | | | | ||||| |||| ||| || || ||||| || || |||| | Sbjct 89851319 --ATTG-TGGTGGT-ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1736 GAAT--TGAAATCCAGATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCCACA 1793 | ||| |||| |||||| | | || ||||| ||||| || ||||||||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1794 TTGTCTTGCCGGTTCTTGAATCACCTTCGACGATGAT--ACTAATAGGTCTCTCTGGCCG 1851 |||| || || || || ||||||| ||| | ||| || ||| | |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1852 CGCAGCGGCACTCATGCCAAAATAATTGTCTGCCCATTCCTGCATCTCTTCTGGTACGTT 1911 ||||||||| | ||||| || |||||||||| |||| ||||||||||| || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1912 AGTGAA 1917 |||||| Sbjct 89851553 AGTGAA 89851558 Score = 116 bits (128), Expect = 6e-23 Identities = 121/157 (77%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 1763 TAATTATGCTTTCCTAATGATCTTGCCCACATTGTCTTGCCGGTTCTTGAATCACCTTCG 1822 || ||||| |||| | ||||||||||||||||| ||||| ||||| |||| |||||| Sbjct 172133974 TAGTTATGTCTTCCCATGGATCTTGCCCACATTGTTTTGCCTGTTCTGGAATTACCTTCT 172134033 Query 1823 ACGATGATACTAA--TAGGTCTCTCTGGCCGCGCAGCGGCACTCATGCCAAAATAATTGT 1880 | ||| |||| | | |||||| | ||||| |||||||| || ||||| || | Sbjct 172134034 ATGAT--TACTGACTTTGGTCTCACCGGCCGTGCAGCGGCTTGTATACCAAAGTATGAAT 172134091 Query 1881 CTGCCCATTCCTGCATCTCTTCTGGTACGTTAGTGAA 1917 |||||||||| |||| |||||| |||| |||||||| Sbjct 172134092 CTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAA 172134128 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 260/370 (70%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1550 CCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTT 1609 ||| | || || |||||||||| ||||| ||| ||||| ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1610 CCATACTTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTT 1669 || || || |||| |||||||| | | || || ||||| || |||||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1670 AATTTCAAATAGCTAGGGCTGACATCATCAATGACGTTATATTCTACGTCATTCGAATAG 1729 || | || | | | | | | ||||| |||| ||| || || ||| || || || Sbjct 165527489 AAGT----ATTG-TGGTGGT-ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1730 ACCCTAGAATTGAAATCCAGATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCC 1789 || | ||| |||| |||||| | | || ||||| |||| || ||||||||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1790 CACATTGTCTTGCCGGTTCTTGAATCACCTTCGACGATGAT--ACTAATAGGTCTCTCTG 1847 |||||||| |||| || || |||| ||||| | ||| | ||| | |||||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1848 GCCGCGCAGCGGCACTCATGCCAAAATAATTGTCTGCCCATTCCTGCATCTCTTCTGGTA 1907 ||||||||||||| | ||||| || ||||||||||| |||| |||||||||| Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1908 CGTTAGTGAA 1917 | |||||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8233466327504