Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003865.1 Length=2663 Score E Sequences producing significant alignments: (Bits) Value seq16 127 3e-26 seq11 120 5e-24 seq13 118 2e-23 >seq16 Length=188620566 Score = 127 bits (140), Expect = 3e-26 Identities = 172/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1603 CTTTAATTTGAACTGACTTTCCATATTTACAGTTGGACTGCCAGTCCCTCTGGGCCCCAA 1662 |||| || ||||| | |||| || || || || | |||||||| || || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1663 TCAATTCTTTCCAGTGCGTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTAT 1722 ||||| |||||||| |||||| | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGT------TTTAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1723 ACTTGACGTCATTTGAGAACACCCTAGAATTGAAATCCAGATGACCACTCATATAGTTAT 1782 | | || || || ||||| ||| ||| ||| || || | || |||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1783 GTGGGCCTAAAGCACGAGCCCACATTGTTTTGCCAGTTCTAGAATCACCTTCGACTATTA 1842 || || || | | ||||||||||| || || ||||| ||||||||||| | ||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 >seq11 Length=168460249 Score = 120 bits (132), Expect = 5e-24 Identities = 189/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 1563 CCCTCTCCAGGATTGCACAGCACGATTGAAGGGATACCGCCTTTAATTTGAACTGACTTT 1622 ||| |||| || ||||| |||| ||||| || || || ||||| | || || ||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1623 CCATATTTACAGTTGGACTGCCAGTCCCTCTGGGCCCCAATCAATTCTTTCCAGTGCGTT 1682 || ||||| |||| |||||||| | | || || ||||| || |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1683 AGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTATACTTGACGTCATTTGAGAAC 1742 || | || || || || | | |||||| |||| ||| || | ||| |||||||| Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1743 ACCCTAGAATTGAAATCCAGATGACCACTCATATAGTTATGTGGGCCTAAAGCACGAGCC 1802 || | ||| |||| |||||||| || ||||||||| || |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1803 CACATTGTTTTGCCAGTTCTAGAATCACCTT 1833 ||||||||||||| || || |||| ||||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTT 165527345 >seq13 Length=197258317 Score = 118 bits (130), Expect = 2e-23 Identities = 249/371 (67%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 1479 AGGAAGATGAATTTGGCATTTTTGAGTGTCCACTCTCTAAGTGC-----TGCATTTTCAG 1533 ||||||||||| | ||||||||||| ||||||| | | || | ||||| | Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAGACCCAACATGCAT-----G 89851165 Query 1534 CTTTGTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCACAGCACGATTGAAG 1593 ||||| | | ||| ||| || |||| || ||||| || | ||||| | Sbjct 89851166 GTTTGTTCAAGTGATCCCAATATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTG 89851225 Query 1594 GGATACCGCCTTTAATTTGAACTGACTTTCCATATTTACAGTTGGACTGCCAGTCCCTCT 1653 | || || ||||| | || || ||| | ||||| ||||| |||||||| | | Sbjct 89851226 GTATGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTT 89851285 Query 1654 GGGCCCCAATCAATTCTTTCCAGTGCGTTAGCTTTAAATAATGCGGAGCGACGTCATCAA 1713 | || ||||| || |||||||||||| || || || || || | | |||||| | Sbjct 89851286 GAGCTCCAATAAACTCTTTCCAGTGC------TTGAAGTATTGTGGTGGTATGTCATCGA 89851339 Query 1714 TGACGTTATACTTGACGTCATTTGAGAACACCCTAGAAT--TGAAATCCAGATGACCACT 1771 ||| ||| || | ||||| |||||||| || | | ||| |||| |||||||| Sbjct 89851340 TGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACA 89851399 Query 1772 CATATAGTTATGTGGGCCTAAAGCACGAGCCCACATTGTTTTGCCAGTTCTAGAATCACC 1831 | ||||||||| || |||| | |||||||||||||| || || || ||||||| Sbjct 89851400 TACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACT 89851459 Query 1832 TTCGACTATTA 1842 ||| | |||| Sbjct 89851460 TTCTATGATTA 89851470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8412663418192