Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003866.1 Length=2583 Score E Sequences producing significant alignments: (Bits) Value seq11 158 2e-35 seq16 145 1e-31 seq13 145 1e-31 >seq11 Length=168460249 Score = 158 bits (174), Expect = 2e-35 Identities = 243/344 (71%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 1691 CCCTCTCCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTG 1750 ||| ||||||| ||||| |||| ||||| |||||||| ||||| | || ||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1751 CCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTT 1810 ||||| || |||| || ||||| | | ||| || ||||||| ||||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1811 AGCTTTAGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAG 1870 | || || || || | ||||||||| |||| ||| || || || || ||||| ||| Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1871 ACCTTTGAATTAAAGTCGAGGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCC 1930 || ||| || ||| | || |||| | || |||||| ||| |||| | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1931 CACATGGTCTTGCCGGTTCGTGAATCACCTTCAACTATGAT-----ACTAATAGGTCTTT 1985 ||||| || |||| || | |||| ||||| |||||| ||| | ||||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCTCA 165527321 Query 1986 CCGCCCGCGCAGCGGCACTCCGACCAAAATAGTCATCTGCCCAT 2029 || |||||||||||| ||||||| || |||||||||| Sbjct 165527320 TCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCAT 165527277 >seq16 Length=188620566 Score = 145 bits (160), Expect = 1e-31 Identities = 216/302 (72%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 1731 CTTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAA 1790 |||| || ||||| || || | |||||| || |||| ||||||||| ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1791 TAAGCTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGAGCTATGTCATCAATGACGTTAT 1850 | || |||||||| |||| | | || || | || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1851 ACTCCGCATTATTTGAAAAGACCTTTGAATTAAAGTCGAGGTGCCCACTCAAATAATTAT 1910 | ||| ||| || || || ||| | | ||| ||||| | | ||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1911 GTGGTCCTAAAGCACGCGCCCACATGGTCTTGCCGGTTCGTGAATCACCTTCAACTATGA 1970 || ||| || | | |||||||| ||||| ||||||| |||||||||||||| ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1971 T--ACTAATAGGTCTTTCCGCCCGCGCAGCGGCACTCCGA-CCAAAATAGTCATCTGCCC 2027 | ||| |||||| | || | ||| || || || |||||| |||||||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 2028 AT 2029 || Sbjct 2249042 AT 2249041 >seq13 Length=197258317 Score = 145 bits (160), Expect = 1e-31 Identities = 256/369 (69%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 1695 CTCCTGGATTGCACAGCACGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGT 1754 ||||||| ||||| || | ||||| |||||||| ||||| | || ||||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1755 ACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCT 1814 | || ||||| || ||||| | ||| || ||||||| ||||||||||||||| | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA--- 89851315 Query 1815 TTAGATAATGCGGAGCTATGTCATCAATGACGTTATACTCCGCATTATTTGAAAAGACCT 1874 || || || || | ||||||||| |||| ||| || || | | ||||| ||||| | Sbjct 89851316 --AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1875 TT--GAATTAAAGTCGAGGTGCCCACTCAAATAATTATGTGGTCCTAAAGCACGCGCCCA 1932 || || | ||| | || |||| | || |||||| ||| |||| | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1933 CATGGTCTTGCCGGTTCGTGAATCACCTTCAACTATGAT--ACTAATAGGTCTTTCCGCC 1990 ||| || || || || | ||||||| ||| | || || ||| | ||||| || | Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1991 CGCGCAGCGGCACTCCGACCAAAATAGTCATCTGCCCATGAACTCATCTCGTCCGGGACG 2050 ||||||||||| | ||||| || |||||||||| | || || || || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 2051 TTAGTAAAG 2059 ||||| ||| Sbjct 89851551 TTAGTGAAG 89851559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8156667574352