Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003867.1 Length=2620 Score E Sequences producing significant alignments: (Bits) Value seq16 188 1e-44 seq13 123 4e-25 seq11 109 9e-21 >seq16 Length=188620566 Score = 188 bits (208), Expect = 1e-44 Identities = 320/457 (70%), Gaps = 14/457 (3%) Strand=Plus/Minus Query 1736 CTTTAATTTGAACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTCTCTGGGCCCCCA 1795 |||| || ||||| || || | ||||||||| |||| ||||||||||| || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1796 GCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1855 | ||||| |||||||| |||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1856 ACTCCACTGCATTTGAATAGACTCGAGAATTGAAATCCAAATGGCCCATGAGATAATTAT 1915 | ||||| | || || | || || ||| || || |||| || | | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1916 GTGGACCCAGTGCACGTGCCCACATTGTCTTCCCTGTTCTCGAGTCTCCTTCAACTATGA 1975 || |||| || | ||||||||||||||| || ||||| || || ||||||| ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1976 T--ACTAATAGGTCTATCTGGCCGCGCAGCGGAACCCCTTCCAAAATAATCGTCTGCCCA 2033 | ||| |||||| ||| || | |||| | | ||||||||| |||||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 2034 TTTTTGCATTTCTTCCGGGACGTCTGTGAAAGAAGACAGATGAAATGGAGGGACCCATGG 2093 ||||||||| ||| || |||| ||||||||||||| ||||| |||||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATGG 2248982 Query 2094 TTCCGGTGGTTTGTGGAAGATCCTTTGTGCA--TTTGCGACCAGGTTATGGTGATGGAGG 2151 || || | | || ||| | || | | || | ||| | || || ||| || | | Sbjct 2248981 AGCCTGT-GCTGGTTGAAAAACC-GTATCCAGTTGTGCATCAAGCTTTTGGAAATTAAAG 2248924 Query 2152 AAGAAATGTTGAGGCTGCTGTTCTTTTATTATTTGTA 2188 | ||| | || ||||||| ||| || || ||||||| Sbjct 2248923 AGGAAGTATTTTGGCTGCTCTTCCTTCATGATTTGTA 2248887 >seq13 Length=197258317 Score = 123 bits (136), Expect = 4e-25 Identities = 254/368 (69%), Gaps = 16/368 (4%) Strand=Plus/Plus Query 1702 CCTGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCCGTAC 1761 ||||| ||||| || | ||||| ||| || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1762 TTGCAATTTGACTGCCAGTCTCTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1821 ||||| || |||||||| | | || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1822 AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTGCATTTGAATAGAC--TC 1879 || || || |||| | |||||| |||| ||| || || || | ||||| |||| | Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1880 GAGAATTGAAATCCAAATGGCC-CATGAGATAATTATGTGGACCCAGTGCACGTGCCCAC 1938 |||| |||| ||| || ||| | || |||||| |||| | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACAT-ACGTAGTTATGTTTTCCCAAAGATCTTGCCCAC 89851433 Query 1939 ATTGTCTTCCCTGTTCTCGAGTCTCCTTCAACTATGAT--ACTAATAGGTCT-ATCTGGC 1995 ||||| || ||||| || || || | ||| | || || ||| | ||||| ||| ||| Sbjct 89851434 ATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATC-GGC 89851490 Query 1996 CGCGCAGCGGAACCCCTTCCAAAATAATCGTCTGCCCATTTTTGCATTTCTTCCGGGACG 2055 |||||||||| |||||| || |||||||||| ||||| ||||| || || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 2056 TCTGTGAA 2063 | ||||| Sbjct 89851551 TTAGTGAA 89851558 >seq11 Length=168460249 Score = 109 bits (120), Expect = 9e-21 Identities = 254/375 (68%), Gaps = 20/375 (5%) Strand=Plus/Minus Query 1696 CCCTCACCTGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTTG 1755 ||| | ||||| ||||| |||| ||||| ||| || || ||||| | || ||||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1756 CCGTACTTGCAATTTGACTGCCAGTCTCTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTT 1815 ||||| ||||| | |||||||| | || || || || | || |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1816 AGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTGCATTTGAATAG 1875 | || || || |||| | |||||| |||| ||| || || | ||||| || Sbjct 165527489 A-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1876 ACTCGAGAATTGAAATCCAAATGGCC-CATGAGATAATTATGTGGACCCAGTGCACGTGC 1934 ||| ||| |||| ||| || ||| | || |||||| |||| | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACAT-ATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1935 CCACATTGTCTTCCCTGTTCTCGAGTCTCCTTCAACTATGAT-----ACTAATAGGTCT- 1988 ||||||||| || | ||| || || | |||| |||||| ||| | ||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCTC 165527322 Query 1989 ATCTGGCCGCGCAGCGGAACCCCTTCCAAAATAATCGTCTGCCCATTTTTGCATTTCTTC 2048 ||| ||||||||||||| ||||| || |||||||||| ||||| ||||| Sbjct 165527321 ATC-GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTC 165527263 Query 2049 CGGGACGTCTGTGAA 2063 || || | ||||| Sbjct 165527262 TGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8275065652128