Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003891.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq16 105 1e-19 seq11 104 4e-19 seq13 96.9 6e-17 >seq16 Length=188620566 Score = 105 bits (116), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1729 CTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCA 1788 |||| || ||||| || |||| ||| || || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1789 TGAACTCTTTAAAGTGTTTCAGATAATGCGGATCGACGTCATCAATGACGTTGTACCACG 1848 || || || ||||||| | | | || || | |||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1849 CATCATTTGAGTACACTCGTGGGCT-CAAGTCCAAATGACCGCATAGATAATTATGCGGG 1907 |||| || ||| | || ||| || | |||||| |||| ||| | || ||||||||| Sbjct 2249213 CATCGTTAGAGAAAAC-CGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTT 2249155 Query 1908 CCTAAAGACCTAGCCCACATGGTTTTGCCCGTACGACTATCACCTTCAAT 1957 || || || || |||||||| || || || || | |||||||||||| Sbjct 2249154 CCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq11 Length=168460249 Score = 104 bits (114), Expect = 4e-19 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1694 TCCTGGATTGCAGAGAAAGATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTA 1753 |||||| ||||| || | ||| || || ||||||||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1754 TTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATA 1813 ||| || || ||||| | | ||| || || || |||||||| |||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1814 ATGCGGATCGACGTCATCAATGACGTTGTACCACGCATCATTTGAGTACACTCGTGGGCT 1873 || || | |||||| |||| |||||| || | |||||| | ||| | | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1874 CAAGTCCAAATGACCGCATAGATAATTATGCGGGCCTAAAGACCTAGCCCACATGGTTTT 1933 ||||| |||||| |||| || ||||| || ||||| || |||||||| ||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1934 GC 1935 || Sbjct 165527364 GC 165527363 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 184/268 (69%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 1694 TCCTGGATTGCAGAGAAAGATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTA 1753 |||||| ||||| || | ||| || || ||||||||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1754 TTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATA 1813 ||| ||| || ||||| | ||| || || || |||||||| |||| || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1814 ATGCGGATCGACGTCATCAATGACGTTGTA--CCACGCATCATTTGAGTACACTCGT--G 1869 || || | |||||| |||| |||||| | ||| || |||||| | ||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1870 GGCTCAAGTCCAAATGACCGCATAGATAATTATGCGGGCCTAAAGACCTAGCCCACATGG 1929 | | ||||| |||||| |||| || ||||| || ||||| || |||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1930 TTTTGCCCGTACGACTATCACCTTCAAT 1957 |||| || || | ||||| ||| || Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTAT 89851465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687858950320