Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003896.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-24 seq13 93.3 7e-16 seq11 80.6 5e-12 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 187/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1733 CTTTAATTTGAACTGGCTTGCCGTACTTGGTGTTGCTTTGCCAATCTCTCTGGGCCCCCA 1792 |||| || ||||| || || | ||||||| || |||||| ||||| || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1793 TGAATTCTTTGAAATGTTTCAGATAATGCGGATCAACGTCATCAATGACGTTATACCACG 1852 ||||| || | ||||| | | | || || | ||||| |||||| |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1853 CATCATTTGAATACACTTTAGGGCTTAAATCAAGGTGCCCACATAAATAATTATGTGGAC 1912 |||| || || | || |||| | || || | | |||| ||||||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1913 CCAATGAACGCGCCCAAACAGTCTTCCCTGTTCTAGACTCACCCTCTATTACTAT--ACT 1970 ||||||| | ||||| | ||||| || ||||| || ||||| || |||| ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1971 TATGGGTCTCAAAGGCCGCGCAGCG 1995 | |||||||| || || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 208/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1698 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTGCCGTA 1757 |||||| ||||| || | ||| || ||||| || ||||| | || ||||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1758 CTTGGTGTTGCTTTGCCAATCTCTCTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATA 1817 ||| ||| ||||||| | || || || || || ||||| | || || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1818 ATGCGGATCAACGTCATCAATGACGTTATA--CCACGCATCATTTGAATACACTTTAGGG 1875 || || | |||||| |||| ||| || | ||| || ||||| | ||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1876 -CTTAAA-TCAAGGTGCCCACATAAATAATTATGTGGACCCAATGAACGCGCCCAAACAG 1933 ||| | || | || ||||||| || |||||| ||||| || | ||||| | | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1934 TCTTCCCTGTTCTAGACTCACCCTCTATTACTAT--ACTTATGGGTCTCAAAGGCCGCGC 1991 | || ||||| || || |||| ||||| | ||| |||| ||||||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1992 AGCGGC 1997 |||||| Sbjct 89851496 AGCGGC 89851501 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 5e-12 Identities = 200/302 (66%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1698 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTGCCGTA 1757 |||||| ||||| || | ||| || ||||| || ||||| | || |||||||||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1758 CTTGGTGTTGCTTTGCCAATCTCTCTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATA 1817 ||| || ||||||| || || || || || || ||||| | || | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1818 ATGCGGATCAACGTCATCAATGACGTTATACCACGCATCATTTGAATACACTTTAGGGCT 1877 || || | |||||| |||| ||| || || | ||||| | ||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1878 TAAATCAAGGTGCCCACATAAATAATTATGTGGACCCAATGAACGCGCCCAAACAGTCTT 1937 || | || ||||||| || |||||| ||||| || | ||||| | || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1938 CCCTGTTCTAGACTCACCCTCTATTACTAT--ACTTATGGGTCTCAAAGGCCGCGCAGCG 1995 | ||| || || | ||| | ||| | | | ||| | ||||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCG 165527307 Query 1996 GC 1997 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8739053946120