Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003897.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq16 143 5e-31 seq13 109 1e-20 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 143 bits (158), Expect = 5e-31 Identities = 192/265 (72%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1726 CTTTAATTTGAACTGGCTTATTGTACTTTCTATTTGATTGCCAGTCCCTTTGGGCCCCCA 1785 |||| || ||||| || || ||||||| | |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1786 TGAATTCCTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAATTACGTTATACCACG 1845 |||||||| |||| |||| | | |||| |||| |||||| |||||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1846 CATCATTACTGTAGACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTC 1905 |||| ||| | | ||| | || | | ||||| || ||||| |||||||||||| || Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1906 CCAGTGATCTGGCCCACATTGTTTTCCCCGTCCTACTGTCACCCTCAATCACTAT--ACT 1963 ||| |||||| ||||||||||| || || || || ||||| ||||| | ||| ||| Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1964 TACGGGCCTCAAAGGCCGCGCAGCG 1988 | || ||||| || || | |||| Sbjct 2249093 GA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 109 bits (120), Expect = 1e-20 Identities = 213/307 (69%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 1691 TCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTATTGTA 1750 |||||| ||||| || | |||||| || || || ||||| | || |||||| | ||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1751 CTTTCTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1810 || | || || ||||| | ||| || || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1811 GTTGGGGTC-TACGTCATCAATTACGTTATA--CCACGCATCATTACTGTAGACCTTTGG 1867 ||| ||| || |||||| || | ||| || | ||| || || | |||| ||| Sbjct 89851320 -TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTC 89851376 Query 1868 GC--TAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAGTGATCTGGCCCACATT 1925 | ||||| | ||||||||| | || |||||| ||||| ||||| ||||||||| Sbjct 89851377 TTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATT 89851436 Query 1926 GTTTTCCCCGTCCTACTGTCACCCTCAATCACTAT--ACTTACGGGCCTCAAAGGCCGCG 1983 ||||| || ||||| |||| || || | ||| |||| || |||| ||||||| Sbjct 89851437 GTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCG 89851494 Query 1984 CAGCGGC 1990 ||||||| Sbjct 89851495 CAGCGGC 89851501 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 205/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 1691 TCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTATTGTA 1750 |||||| ||||| || | |||||| || || || ||||| | || |||||| ||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1751 CTTTCTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1810 || | | || ||||| | | ||| || || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1811 GTTGGGGTC-TACGTCATCAATTACGTTATACCACGCATCATTACTGTAGACCTTTGGGC 1869 ||| ||| || |||||| || | ||| || || | || | |||| ||| | Sbjct 165527484 -TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1870 TAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTT 1929 | |||| | ||||||||| | || |||||| ||||| ||||| ||||||||||||| Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1930 TCCCCGTCCTACTGTCACCCTCAATCACTAT--ACTTACGGGCCTCAAAGGCCGCGCAGC 1987 | | ||||| | ||| | || | | | |||| || |||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGC 165527308 Query 1988 GGC 1990 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719858430800