Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003898.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq13 82.4 1e-12 >seq13 Length=197258317 Score = 82.4 bits (90), Expect = 1e-12 Identities = 202/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1685 CCTGGATTGCAAAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTAT 1744 ||||| ||||| || | ||||||||| || || ||||| | || |||| || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1745 TTGGTGTCGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1804 ||| || ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1805 TGGGGATCGACGTCATCAATGACGTTGTACCATGCCTCATTGTTGTAGACTCTTGGG-CT 1863 || || | |||||| |||| |||||| | || || | ||||| || || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1864 T-AGGTCAAGATGACCACACAAGTAATTGTGTGGGCCTAGAGACCTGGCCCAAAGTGTCT 1922 | ||||| | ||||||||| | ||| || ||| || | ||| || ||||| | ||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1923 TCCCTGTAC--GACTCTCTCCCTCTACCACAATACTCATGGGTCTCCATGGCCGCGCAGC 1980 | ||||| | || || || |||| | || | | |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTT--TCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1981 GG 1982 || Sbjct 89851499 GG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655859469840