Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_003898.1
Length=2739
Score E
Sequences producing significant alignments: (Bits) Value
seq13 82.4 1e-12
>seq13
Length=197258317
Score = 82.4 bits (90), Expect = 1e-12
Identities = 202/302 (67%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 1685 CCTGGATTGCAAAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTAT 1744
||||| ||||| || | ||||||||| || || ||||| | || |||| || |||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1745 TTGGTGTCGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1804
||| || ||||| | ||| || || || || ||||| ||||||| | ||
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320
Query 1805 TGGGGATCGACGTCATCAATGACGTTGTACCATGCCTCATTGTTGTAGACTCTTGGG-CT 1863
|| || | |||||| |||| |||||| | || || | ||||| || ||
Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380
Query 1864 T-AGGTCAAGATGACCACACAAGTAATTGTGTGGGCCTAGAGACCTGGCCCAAAGTGTCT 1922
| ||||| | ||||||||| | ||| || ||| || | ||| || ||||| | ||| |
Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440
Query 1923 TCCCTGTAC--GACTCTCTCCCTCTACCACAATACTCATGGGTCTCCATGGCCGCGCAGC 1980
| ||||| | || || || |||| | || | | |||||| |||||||||||
Sbjct 89851441 TACCTGTCCTGGAATCACTT--TCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498
Query 1981 GG 1982
||
Sbjct 89851499 GG 89851500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8655859469840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |