Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004005.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq16 123 4e-25 seq13 102 1e-18 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 185/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 1746 CTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCA 1805 |||| || |||| || || | |||||| || ||||||||| || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1806 TGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACG 1865 |||||||| |||| |||||| | || |||| |||| |||||| ||||| || | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1866 CATCATTACTGTACACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGC 1925 |||| ||| | | ||| | || | | ||||| || |||| ||||||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1926 CTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACTAT 1985 | | || || ||||||||||| || || ||||| |||||| ||||| | || | Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 1986 TAGGTCTCCATGGCCGCGCAGCG 2008 ||||||| |||| || | |||| Sbjct 2249093 GAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 207/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1711 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTA 1770 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1771 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1830 || ||| ||||| | || || || || || || || ||||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1831 ATGCGGGTCTACGTCATCAATGACGTTGTA--CCACGCATCATTACTGTACACCTTTGGG 1888 || || || |||||| |||| |||||| | ||| || || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1889 -CTT-AGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTG 1946 ||| ||||| | ||| ||||||| || |||||| || | ||| || |||||||||| Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1947 TTTTGCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAG 2006 |||| ||||| ||| ||||| || |||| || || |||||| |||||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAG 89851497 Query 2007 CGG 2009 ||| Sbjct 89851498 CGG 89851500 Score = 78.8 bits (86), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 1819 GTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTA 1878 |||||| || || || || || |||||| |||| |||||| || | || | | Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 172133940 Query 1879 CACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGC 1938 || ||| | | ||||| | || ||||||| || |||||| || | || || || Sbjct 172133941 GACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGC 172133999 Query 1939 CCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACT--ATTAGGTCTCCAT 1996 |||||||||||||||||||||| || ||| || ||| | |||| || |||||| Sbjct 172134000 CCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATG--ATTACTGACTTTGGTCTCACC 172134057 Query 1997 GGCCGCGCAGCGG 2009 ||||| ||||||| Sbjct 172134058 GGCCGTGCAGCGG 172134070 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1711 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTA 1770 |||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1771 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1830 || || ||||| | | || || || || || || || ||||| | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1831 ATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCT 1890 || || || |||||| |||| |||||| || | || | | || ||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1891 TAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTT 1950 |||| | ||| ||||||| || |||||| || | ||| || |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1951 GCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGG 2009 || ||| ||| || ||| | |||| | || |||||| ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8787053143920