Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004044.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-17 seq11 84.2 4e-13 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 208/305 (68%), Gaps = 8/305 (3%) Strand=Plus/Plus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || ||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1740 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1799 ||| ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1800 ATGCGGATCTACGTCATCAATGACGTTG-AACCAAGCATCATTACTGTACACCTTTGGAC 1858 || || || |||||| |||| |||| || ||| | || || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAA-CGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1859 --TCAGATCCAAATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCACATCGT 1916 | || |||| ||||||||| | ||| |||||| ||| || || || |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1917 CTTCCCCGTTCTACTATCACCCTCTATCACTAT--ACTTACCGGTCTTAAAGGCCGCGCA 1974 || || || || ||||| ||||| | ||| |||| ||||| | ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1975 GCGGC 1979 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 4e-13 Identities = 201/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || ||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1740 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1799 ||| || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1800 ATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGACT 1859 || || || |||||| |||| |||| | ||| | || | | || ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1860 CAGATCCAAATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCACATCGTCTT 1919 | |||| ||||||||| | ||| |||||| ||| || || || |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1920 CCCCGTTCTACTATCACCCTCTATCACTAT--ACTTACCGGTCTTAAAGGCCGCGCAGCG 1977 | || || || ||| | ||| | | | |||| ||||| | |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1978 GC 1979 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8639859729600