Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004090.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq16 116 6e-23 seq13 113 8e-22 seq11 98.7 2e-17 >seq16 Length=188620566 Score = 116 bits (128), Expect = 6e-23 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 1746 CTTTAATTTGAACTGGCTTCCCGTACTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1803 |||| || ||||| || || | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1804 CATAAATTCTTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTATA--C 1861 | ||||| || |||| |||| | | || |||| |||| |||||| |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1862 CAAGCATCATTACTGTATACTTTAGGGCTTAGATCAAGATGTCCACACAAATAATTGTGT 1921 || |||| ||| | | || |||| | | || | || |||| |||||||| ||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1922 GGTCCCAATGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTAT 1974 |||||||||||| ||||||||||| || || || | ||||||||| || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq13 Length=197258317 Score = 113 bits (124), Expect = 8e-22 Identities = 210/304 (69%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1711 TCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1770 |||||| ||||| || | ||| ||||| || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1771 CTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGATA 1830 || ||| ||||| | ||| || || ||||| ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1831 GTGCGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTAGGG-C 1889 || || || |||||| |||| ||| || | | || || | | ||||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1890 TT-AGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAATGATCTGGCCCACATTGTT 1948 || || || | ||| ||||| | || || ||| |||||| ||||| |||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1949 TTACCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCCCCAAGGCCGCGCAG 2006 |||||||| | ||||| |||||| | || ||||| |||| | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 2007 CGGC 2010 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 204/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1711 TCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1770 |||||| ||||| || | ||| ||||| || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1771 CTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGATA 1830 || || ||||| | | ||| || || ||||| ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1831 GTGCGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTAGGGCT 1890 || || || |||||| |||| ||| || ||| | || | | ||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1891 TAGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAATGATCTGGCCCACATTGTTTT 1950 | || | ||| ||||| | || || ||| |||||| ||||| |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1951 ACCTGTACGACTATCACCTTCTATCACAAT--ACTTTTGGGTCCCCAAGGCCGCGCAGCG 2008 | ||| | || ||||| ||| | | ||||| |||| | |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 2009 GC 2010 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745453839160