Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004091.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq13 105 1e-19 seq16 102 1e-18 seq11 98.7 2e-17 >seq13 Length=197258317 Score = 105 bits (116), Expect = 1e-19 Identities = 212/307 (69%), Gaps = 12/307 (4%) Strand=Plus/Plus Query 1680 TCCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATA 1739 |||||| |||||||| | ||||||||| || || ||||| | || |||||| | || Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1740 CTTTGTA-TTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGAT 1798 |||| | || || ||||| | ||| || || || || || || ||||||| | | Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1799 A--GTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACCTTTGG 1856 | |||| ||| | |||||| |||| ||| || | | || || | | || ||| Sbjct 89851319 ATTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTC 89851376 Query 1857 GC--TGAGATCAAGATGTCCACACAGATAATTGTGTGGTCCTAACGACCTAGCCCACATT 1914 |||| || | ||| ||||| | || || ||| ||| || || || ||||||||| Sbjct 89851377 TTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATT 89851436 Query 1915 GTTTTACCAGTACGACTATCACCTTCTATCACAAT--ACTAATCGGTCTCAAAGGCCGCG 1972 |||||||| || | ||||| |||||| | || ||| | ||||||| ||||||| Sbjct 89851437 GTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCG 89851494 Query 1973 CAGCGGC 1979 ||||||| Sbjct 89851495 CAGCGGC 89851501 >seq16 Length=188620566 Score = 102 bits (112), Expect = 1e-18 Identities = 185/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1715 CTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCA 1774 |||| || ||||| || || | ||||| || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1775 TGAATTCCTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTATA--CCA 1832 |||||||| |||| |||| | | || |||| |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1833 AGCATCATTGCTGTATACCTTTGGGCTGAGATCAAGATGTCCACACAGATAATTGTGTGG 1892 |||| || | | ||| | || | | || | || |||| | |||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1893 TCCTAACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAAT--A 1950 ||| || || || ||||||||||| || || || | ||||||||| || | || | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1951 CTAATCGGTCTCAAAGGCCGCGCAGCG 1977 || | |||||||| || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 239/353 (68%), Gaps = 13/353 (4%) Strand=Plus/Minus Query 1680 TCCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATA 1739 |||||| |||||||| | ||||||||| || || ||||| | || |||||| || || Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1740 CTTTGTATTG-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGAT 1798 |||| | | || ||||| | | ||| || || || || || || ||||| | | | Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1799 A--GTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACCTTTGG 1856 | |||| ||| | |||||| |||| ||| || ||| | || | | || ||| Sbjct 165527485 ATTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTT 165527428 Query 1857 GCTGAGATCAAGATGTCCACACAGATAATTGTGTGGTCCTAACGACCTAGCCCACATTGT 1916 | || | || | ||| ||||| | || || ||| ||| || || || ||||||||||| Sbjct 165527427 GTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGT 165527368 Query 1917 TTTACCAGTACGACTATCACCTTCTATCACAAT--ACTAATCGGTCTCAAAGGCCGCGCA 1974 ||| | || | || ||||| ||| | | ||| | ||||||| ||||||||| Sbjct 165527367 TTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCA 165527310 Query 1975 GCGGC--ATTGACAACATTAT-TTGCAGACCATTCATGAAGTTCTTCTGGAAC 2024 ||||| | ||| | | ||| | | |||||| || || |||||||| || Sbjct 165527309 GCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687858950320