Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004097.1 Length=2615 Score E Sequences producing significant alignments: (Bits) Value seq13 141 2e-30 seq11 141 2e-30 >seq13 Length=197258317 Score = 141 bits (156), Expect = 2e-30 Identities = 212/300 (71%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 1558 CCAGGATTGCATAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1617 || || |||||||| | ||| || || || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1618 TTGCAGTTTGATTGCCAATCACGTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATAA 1677 |||||||| || ||||||| |||| || || || |||||||| |||| || | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1678 TGCGGATCAACGTCATCTATGACGTTATACCATGCATGATTGGAGTAAA--TTCTCGGGT 1735 || || | |||||| |||| ||| || | | || ||| | | || || | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1736 TGAGATCGATATGACCACATAGGTAATTGTGAGGACCCAGACTTCGGGCCCATATTGTCT 1795 |||| || ||||||||||||| ||| || || |||| | || ||||| ||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1796 TGCCTGTTCTTGATGGTCCTTCAACGATGATTGATATAGGTCTCAACGGCCGCGCAGCGG 1855 | ||||| || || | ||| | ||| ||||| | ||||||| |||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 141 bits (156), Expect = 2e-30 Identities = 210/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 1558 CCAGGATTGCATAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTAT 1617 || || |||||||| | ||| || || || |||||||| | || ||||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1618 TTGCAGTTTGATTGCCAATCACGTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATAA 1677 ||||||| || ||||||| ||||| || || || |||||||| |||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1678 TGCGGATCAACGTCATCTATGACGTTATACCATGCATGATTGGAGTAAATTCTCGGGTTG 1737 || || | |||||| |||| ||| || || | || ||| | | | | |||| Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1738 AGATCGATATGACCACATAGGTAATTGTGAGGACCCAGACTTCGGGCCCATATTGTCTTG 1797 | || ||||||||||||| ||| || || |||| | || ||||| ||||| ||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1798 CCTGTTCTTGATGGTCCTTCAACGATGATTGATATAGGTCTCAACGGCCGCGCAGCGG 1855 | ||| || || |||| | ||| |||| | ||||||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8259065911888