Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004101.1 Length=2613 Score E Sequences producing significant alignments: (Bits) Value seq16 132 8e-28 seq13 131 3e-27 seq11 118 2e-23 >seq16 Length=188620566 Score = 132 bits (146), Expect = 8e-28 Identities = 170/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1600 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAA 1659 |||| || ||||| || |||| ||| || || || | ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1660 TAAGCTCTTTCCAGTGTTTCATCTTTAGATATTGGGGCGTGATATCATCAATGACGTTAT 1719 | || ||||||||||| || | |||| || | | | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1720 ACTCCACATAGTTTGAATAGACCTTTGCATTGAAATCAAGATGACCGCTCAAATAATTAT 1779 | ||||||| ||| || | ||| | | ||| || || | || ||| || |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1780 GTGGGCCTAGTGCACGTGCCCACATTGTCTTGCCGCATCGCGAATCACCCTCAAT 1834 || || | || | ||||||||||||||| ||| || |||||||| ||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq13 Length=197258317 Score = 131 bits (144), Expect = 3e-27 Identities = 215/305 (70%), Gaps = 14/305 (5%) Strand=Plus/Plus Query 1566 CCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1625 ||||| ||||| || | ||||| |||||| || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1626 TTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAATAAGCTCTTTCCAGTGTTTCATCTTT 1685 || ||||| |||||||| | || ||| || ||||||| |||||||||||| ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CTTG 89851314 Query 1686 AGATATTGGGGCGTGATATCATCAATGACGTTATACTCCACATAGTTTGAATAGACCTTT 1745 | ||||| || | || ||||| |||| ||| || || || | |||||| |||| ||| Sbjct 89851315 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1746 GC--ATTGAAATCAAGATGACCGCTCAAATAATTATGTGGGCCTAGTGCACGTGCCCACA 1803 | |||| || | |||||| | | || |||||| || | | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1804 TTGTCTTGCCGCATCGCGAATCACCCTCAATGACAAT--ACTAATCGGTCT-ATCTGGCC 1860 |||| || || | ||||||| || |||| || ||| | ||||| ||| |||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATC-GGCC 89851491 Query 1861 GCGCA 1865 ||||| Sbjct 89851492 GCGCA 89851496 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 1566 CCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1625 ||||| ||||| |||| ||||| |||||| || ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1626 TTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAATAAGCTCTTTCCAGTGTTTCATCTTT 1685 || |||| |||||||| | | ||| || ||||||| |||||||||||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG------CATG 165527490 Query 1686 AGATATTGGGGCGTGATATCATCAATGACGTTATACTCCACATAGTTTGAATAGACCTTT 1745 | ||||| || | || ||||| |||| ||| || || | | |||||| |||| ||| Sbjct 165527489 AAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTT 165527430 Query 1746 GCATTGAAATCAAGATGACCGCTCAAATAATTATGTGGGCCTAGTGCACGTGCCCACATT 1805 ||| || | |||||| | | || |||||| || | | | |||||||||| Sbjct 165527429 TTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATT 165527370 Query 1806 GTCTTGC 1812 || |||| Sbjct 165527369 GTTTTGC 165527363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8252666015792