Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004147.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq11 100 5e-18 >seq11 Length=168460249 Score = 100 bits (110), Expect = 5e-18 Identities = 207/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1697 TCCTGGATTGCAGAGGAAGATAGTGGGTATTCCTCCTTTAATTTGAACTGGCTTTCCGTA 1756 |||||| ||||| || | ||| || ||||| |||||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1757 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAAT 1815 |||| | | || ||||| | | ||| || || || || || || ||||| | || | Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1816 AATGCGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTATT---GTAGACCTTAG 1872 | || || | |||||| |||| |||||| | || | || || | |||| || Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTT 165527429 Query 1873 GACTAAGGTCTAAGTGACCACACAGATAATTATGTGGACCCAAAGACCTAGCCCACATCG 1932 | |||| | |||||||| | || |||||| |||||||| || |||||||| | Sbjct 165527428 TGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTG 165527369 Query 1933 TCTTTCCTGTTCTACTATCACCCTCTATGACAATACTCATGGGTCTCAAAGTCCGCGCAG 1992 | || | ||| || || ||| | ||||| | | | ||||||| | |||||||| Sbjct 165527368 TTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAG 165527309 Query 1993 CGGC 1996 |||| Sbjct 165527308 CGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678259106176