Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004153.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 9e-15 seq11 80.6 5e-12 >seq13 Length=197258317 Score = 89.7 bits (98), Expect = 9e-15 Identities = 205/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 1685 CCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTAC 1744 ||||| ||||| || | ||| | ||| ||||| ||||| | || ||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1745 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAG 1804 || ||| ||||| | ||| || || || || ||||| | ||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1805 TGCGGATCAACGTCATCGATGACGTTG-AACCAAGCATCATTACTGTACACCTTTGGGC- 1862 || || | ||||||||||| |||| || ||| | || || | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAA-CGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1863 -TCAAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTC 1921 | | || | ||||||||| | || || ||| ||||| |||| |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1922 TTCCCCGTCCTGCTATCACCCTCTATGACTAT--ACTTATTGGTCGTAATGGCCGCGCAG 1979 || || |||||| ||||| ||||||| ||| |||| ||||| | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAG 89851497 Query 1980 CGG 1982 ||| Sbjct 89851498 CGG 89851500 Score = 78.8 bits (86), Expect = 2e-11 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 2317 TTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGG-GATGTGAGATCGA 2375 |||||| | ||| || || ||||| || | | ||| | ||||| ||| ||| || | Sbjct 89851838 TTTAGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGAT-TGATGTCAA 89851896 Query 2376 AGAATCTTTGGTTTTTACATTGGAATTTCCCTTCG-AAT-TGGATGAGAACATGCAGGTG 2433 |||||||| | |||| ||||| ||||| || ||| || || | |||||| || || Sbjct 89851897 AGAATCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACATGTAGATG 89851956 Query 2434 AGGAGTTCCATCTTCGTGGAATTCTCTGCAGATGCGGATAAATAGTTTAT 2483 ||| | | |||||||| ||||||||||||||| ||| ||| ||||| Sbjct 89851957 AGGTTTACTGTCTTCGTGCAATTCTCTGCAGATGGCGAT--ATACTTTAT 89852004 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 5e-12 Identities = 199/300 (66%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 1685 CCTGGATTGCACAGGAAGATAGCTGGAATGCCACCTTTAATTTGAACTGGTTTTCCGTAC 1744 ||||| ||||| || | ||| | ||| ||||| ||||| | || ||| || ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1745 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAG 1804 || || ||||| | | ||| || || || || ||||| | ||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1805 TGCGGATCAACGTCATCGATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGGCTC 1864 || || | ||||||||||| |||| | ||| | || | | || ||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1865 AAATCAAGATGACCACACAGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTC 1924 || | ||||||||| | || || ||| ||||| |||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1925 CCCGTCCTGCTATCACCCTCTATGACTAT--ACTTATTGGTCGTAATGGCCGCGCAGCGG 1982 | |||||| || ||| | ||||| | | |||| ||||| | ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675059158128