Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004192.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq13 78.8 2e-11 >seq13 Length=197258317 Score = 78.8 bits (86), Expect = 2e-11 Identities = 199/302 (66%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 1693 TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGCACTGGCTTTCCGTA 1752 |||||| ||||| || | ||| | || || || ||||| | | |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1753 TTTCGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGTTTTAGGTA 1812 ||| || || ||||| | ||| || || || || || || |||| || | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1813 GTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTAGACCTTAGGGC- 1871 || || | |||||| |||| |||||| |||| || | |||| || Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1872 -TAAGGTCTAGATGACCACACAAATAATTGTGTGGACCCAACGACCTAGCCCACATGGTC 1930 | ||||| | ||||||||| | || || ||| ||||| || || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1931 TTCCCTGTTCGACTATCACCCTCTACCACAATACTCATGGGTCTCAATGGCCGCGCAGCG 1990 || ||||| | ||||| |||| | || | | ||||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1991 GC 1992 || Sbjct 89851500 GC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700658742512