Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004300.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-17 seq11 84.2 4e-13 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 206/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1698 TCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1757 |||||| ||||| || | |||||| || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1758 TTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1817 ||| || || ||||| | | ||| || || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1818 GTGGGGGTCTACGTCATCAATTACGTTATACCAGGCATCATTACTGTAGACTTTTGGGC- 1876 || || || |||||| || | ||| || | || || | |||||||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1877 -TAAGGTCTAGATGACCACACAGATAATTATGTGGTCCAAGTGATCTGGCCCACATCGTC 1935 | ||||| | ||||||||| | || |||||| ||| | ||||| |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1936 TTCCCAGTTCTACTGTCACCCTCGATCACTAT--ACTTATGGGCCTTATAGGCCGCGCAG 1993 || || || || |||| || || | ||| |||| || || || |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1994 CGGC 1997 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 4e-13 Identities = 201/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1698 TCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1757 |||||| ||||| || | |||||| || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1758 TTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1817 ||| | || ||||| | ||| || || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1818 GTGGGGGTCTACGTCATCAATTACGTTATACCAGGCATCATTACTGTAGACTTTTGGGCT 1877 || || || |||||| || | ||| || || | || | |||||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1878 AAGGTCTAGATGACCACACAGATAATTATGTGGTCCAAGTGATCTGGCCCACATCGTCTT 1937 |||| | ||||||||| | || |||||| ||| | ||||| |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1938 CCCAGTTCTACTGTCACCCTCGATCACTAT--ACTTATGGGCCTTATAGGCCGCGCAGCG 1995 | || || | ||| | || | | | |||| || || || |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1996 GC 1997 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713458534704