Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004558.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq16 147 4e-32 seq13 104 4e-19 seq11 98.7 2e-17 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 195/267 (73%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1732 CTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCA 1791 |||| || ||||| || || | |||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1792 TGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTA--CCA 1849 ||||| || |||| |||| | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1850 GGCATCATTACTGTAAACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGG 1909 |||| ||| | ||||| | || | | ||||| || ||||| |||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1910 TCCCAATGATCTGGCCCACATAGTCTTCCCCGTCCTACTGTCACCCTCAATTACTAT--A 1967 |||||||||||| |||||||| ||||| || || || ||||| ||||||| ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1968 CTTATGGGTCTCAGAGGCCGCGCAGCG 1994 || | ||||||| || || | |||| Sbjct 2249095 CTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 211/306 (69%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 1697 TCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1756 |||||| ||||| || | | | || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1757 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGT 1815 |||| | || || ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1816 A--GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAAACCTTTGG 1873 | |||| ||| | |||||| |||| |||||| | || || | | || ||| Sbjct 89851319 ATTGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTC 89851376 Query 1874 GC--TAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAATGATCTGGCCCACATA 1931 | ||||| | ||||||||| | || |||||| |||||| ||||| |||||||| Sbjct 89851377 TTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATT 89851436 Query 1932 GTCTTCCCCGTCCTACTGTCACCCTCAATTACTAT--ACTTATGGGTCTCAGAGGCCGCG 1989 || || || ||||| |||| || || | ||| |||| ||||||| ||||||| Sbjct 89851437 GTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCG 89851494 Query 1990 CAGCGG 1995 |||||| Sbjct 89851495 CAGCGG 89851500 >seq11 Length=168460249 Score = 98.7 bits (108), Expect = 2e-17 Identities = 208/304 (68%), Gaps = 10/304 (3%) Strand=Plus/Minus Query 1697 TCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1756 |||||| ||||| || | | | || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1757 CTTTGTATTT-GATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGT 1815 |||| | | || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1816 A--GTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAAACCTTTGG 1873 | |||| ||| | |||||| |||| |||||| || | || | | || ||| Sbjct 165527485 ATTGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTT 165527428 Query 1874 GCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAATGATCTGGCCCACATAGT 1933 | | |||| | ||||||||| | || |||||| |||||| ||||| |||||||| || Sbjct 165527427 GTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGT 165527368 Query 1934 CTTCCCCGTCCTACTGTCACCCTCAATTACTAT--ACTTATGGGTCTCAGAGGCCGCGCA 1991 || | ||||| | ||| | || | | | |||| ||||||| ||||||||| Sbjct 165527367 TTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCA 165527310 Query 1992 GCGG 1995 |||| Sbjct 165527309 GCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713458534704