Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004569.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-24 seq13 98.7 2e-17 seq11 93.3 7e-16 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 187/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 1737 CTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCA 1796 |||| || |||| || || | |||||| || ||||||||| || || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1797 TGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTA--CCA 1854 |||||||| |||| |||||| | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1855 TGCATCATTACTGTATACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGG 1914 |||| ||| | | ||| | || | | ||||| || |||| ||||||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1915 GCCTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACT 1974 || | || || ||||||||||| || || ||||| |||||| ||||| | || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1975 ATTAGGTCTCCATGGCCGCGCAGCG 1999 | ||||||| |||| || | |||| Sbjct 2249095 CTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 204/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1702 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTA 1761 |||||| ||||| || | ||| || || || || ||||| | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1762 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1821 || ||| ||||| | || || || || || || || ||||||| || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1822 ATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTATACCTTTGGG-C 1880 || || || |||||| |||| |||||| | || || | | || ||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1881 TT-AGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTT 1939 || ||||| | ||| ||||||| || |||||| || | ||| || |||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1940 TTGCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCG 1999 || ||||| ||| ||||| || |||| || || |||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 2000 G 2000 | Sbjct 89851500 G 89851500 Score = 78.8 bits (86), Expect = 2e-11 Identities = 135/193 (70%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 1810 GTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTA 1869 |||||| || || || || || |||||| |||| |||||| || | || | | Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 172133940 Query 1870 TACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGC 1929 || ||| | | ||||| | || ||||||| || |||||| || | || || || Sbjct 172133941 GACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGC 172133999 Query 1930 CCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACT--ATTAGGTCTCCAT 1987 |||||||||||||||||||||| || ||| || ||| | |||| || |||||| Sbjct 172134000 CCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATG--ATTACTGACTTTGGTCTCACC 172134057 Query 1988 GGCCGCGCAGCGG 2000 ||||| ||||||| Sbjct 172134058 GGCCGTGCAGCGG 172134070 >seq11 Length=168460249 Score = 93.3 bits (102), Expect = 7e-16 Identities = 200/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1702 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTA 1761 |||||| ||||| || | ||| || || || || ||||| | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1762 CTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATA 1821 || || ||||| | | || || || || || || || ||||| | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1822 ATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTATACCTTTGGGCT 1881 || || || |||||| |||| |||||| || | || | | || ||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1882 TAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTT 1941 |||| | ||| ||||||| || |||||| || | ||| || |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1942 GCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGG 2000 || ||| ||| || ||| | |||| | || |||||| ||||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8790253090440