Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004580.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq13 165 1e-37 seq11 161 2e-36 seq16 147 4e-32 >seq13 Length=197258317 Score = 165 bits (182), Expect = 1e-37 Identities = 269/385 (70%), Gaps = 12/385 (3%) Strand=Plus/Plus Query 1553 CCTGGATTGCAAAGCACGATTGAAGGGATCCCTCCTTTAATTTGAACTGGTTTCCCGTAC 1612 ||||| ||||| || | ||||| || || |||||||| | || ||| || |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1613 TTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGAAGCTCTTTCCAATGCTTTAGCTTT 1672 ||||| || |||||||| | || ||| || |||| || ||||||||| ||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1673 AGGTATTGCGGTGCTACGTCATCAATGACGTTATAGGCAACATTATTCGAGTACACTCGA 1732 |||||| |||| || |||||| |||| ||| || |||| | || ||| | ||| Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1733 T--TATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAAAGCACGAGCCCACA 1790 | | |||| ||||| || |||| | ||| |||||| || |||| | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1791 TCGTCTTGCCCGTTCTAGAATCACCTTCCACTATGA--GACTAACTGGTCTTACAGGCCG 1848 | || || || || || ||||||| ||| | || | |||| |||||| | ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1849 CGCAGCGGGACCCATTCCAAAATAATCATCCGCCCATTCTTGCATCTGTTCAGGAACGTT 1908 |||||||| | |||||| || ||| ||||||| ||||| | ||| || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1909 AGTGAAAGAGGAAAGTGGAAATGGA 1933 |||||| || | ||| |||||| Sbjct 89851553 AGTGAAGCTTGATAATGGGAATGGA 89851577 Score = 120 bits (132), Expect = 5e-24 Identities = 196/278 (71%), Gaps = 7/278 (3%) Strand=Plus/Plus Query 1668 GCTTTAGGTATTGCGGTGCTACGTCATCAATGACGTTATAGGCAACATTATTCGAGTACA 1727 |||| | |||||| |||| || |||||| |||| ||| ||| || | || || ||| | | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1728 CTCGATTATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAAAGCACGAGCCC 1787 || || |||| ||||| || |||| | ||| |||||| || | | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1788 ACATCGTCTTGCCCGTTCTAGAATCACCTTCCACTATGAG-ACTAACT--GGTCTTACAG 1844 |||| || ||||| ||||| |||| |||||| ||||| ||| ||| ||||| || | Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTC---TATGATTACTGACTTTGGTCTCACCG 172134058 Query 1845 GCCGCGCAGCGGGACCCATTCCAAAATAATCATCCGCCCATTCTTGCATCTGTTCAGGAA 1904 |||| ||||||| || ||||| || ||| ||||||||||||| | ||| | | Sbjct 172134059 GCCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTA 172134118 Query 1905 CGTTAGTGAAAGAGGAAAGTGGAAATGGAGGGACCCAT 1942 | |||||||| || | || |||||| |||||| Sbjct 172134119 CATTAGTGAAGCTTGATAACGGGAATGGACATACCCAT 172134156 >seq11 Length=168460249 Score = 161 bits (178), Expect = 2e-36 Identities = 329/483 (68%), Gaps = 23/483 (5%) Strand=Plus/Minus Query 1468 GATGAAGATAACATTCTTGAGAGTCCAATGTTTGAGCGACGCAT--TTTCCGCTTTATCC 1525 |||||| | ||| |||||||||||||| | || | || || | || | ||| | | Sbjct 165527687 GATGAACACAACGTTCTTGAGAGTCCATTCCTTCAA--ACCCAACATGTCTGGTTTGTTC 165527630 Query 1526 AGGAAATCTTTATAGCTGGAT-CCCTCGCCTGGATTGCAAAGCACGATTGAAGGGATCCC 1584 | | ||| ||| || | ||| | ||||| ||||| |||| ||||| || || || Sbjct 165527629 AAGTGATCCCAATA--TGAAAACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCC 165527572 Query 1585 TCCTTTAATTTGAACTGGTTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCC 1644 |||||| | || ||| || ||||| ||||| | |||||||| | | ||| || || Sbjct 165527571 TCCTTTGAAAAGACTTGGCTTGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCC 165527512 Query 1645 AAGAAGCTCTTTCCAATGCTTTAGCTTTAGGTATTGCGGTGCTACGTCATCAATGACGTT 1704 || || ||||||||| ||| | | |||||| |||| || |||||| |||| ||| Sbjct 165527511 AATAAACTCTTTCCAGTGCATGAA------GTATTGTGGTGGTATGTCATCGATGATGTT 165527458 Query 1705 ATAGGCAACATTATTCGAGTACACTCGATTATTGAAGTCCAGGTGTCCACTGAGGTAATT 1764 ||| || | || || ||| | ||| || ||| ||||| || |||| | ||| || Sbjct 165527457 GTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTT 165527398 Query 1765 ATGTGGGCCTAAAGCACGAGCCCACATCGTCTTGCCCGTTCTAGAATCACCTTCCACTAT 1824 |||| || |||| | |||||||| || |||| || || |||| ||||| ||| Sbjct 165527397 ATGTCTTCCCAAAGATCTTGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTT---TAT 165527341 Query 1825 GA-----GACTAACTGGTCTTACAGGCCGCGCAGCGGGACCCATTCCAAAATAATCATCC 1879 || |||| |||||| | ||||||||||||| | ||||| || ||| Sbjct 165527340 GATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCT 165527283 Query 1880 GCCCATTCTTGCATCTGTTCAGGAACGTTAGTGAAAGAGGAAAGTGGAAATGGAGGGACC 1939 ||||||||||||| | ||| || || |||||||| || | || |||||| ||| Sbjct 165527282 GCCCATTCTTGCAGGTCTTCTGGTACATTAGTGAAGCTTGATAACGGGAATGGACTTACC 165527223 Query 1940 CAT 1942 ||| Sbjct 165527222 CAT 165527220 >seq16 Length=188620566 Score = 147 bits (162), Expect = 4e-32 Identities = 235/336 (70%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1587 CTTTAATTTGAACTGGTTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAA 1646 |||| || ||||| ||||| | ||||||||| |||| ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1647 GAAGCTCTTTCCAATGCTTTAGCTTTAGGTATTGCGGTGCTACGTCATCAATGACGTTAT 1706 | | || ||||| || |||| |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAAC------ATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1707 AGGCAACATTATTCGAGTACACTCGATTATTGAAGTCCAGGTGTCCACTGAGGTAATTAT 1766 | | |||| || ||| | || | ||| ||||| | | ||||| | ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1767 GTGGGCCTAAAGCACGAGCCCACATCGTCTTGCCCGTTCTAGAATCACCTTCCACTATGA 1826 || || || | | |||||||| ||||| || ||||| ||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1827 --GACTAACTGGTCTTACAGGCCGCGCAGCGGGACCCATTCCAAAATAATCATCCGCCCA 1884 |||| | ||||| | || || | |||| | | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1885 TTCTTGCATCTGTTCAGGAACGTTAGTGAAAGAGGA 1920 || |||||| || || ||||| |||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8307065132608