Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004582.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 1e-13 >seq13 Length=197258317 Score = 86.0 bits (94), Expect = 1e-13 Identities = 206/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1675 CCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1734 || || ||||| || | |||||| ||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1735 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAG 1794 || ||| || ||||| | ||| || || || |||||||| ||||||||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1795 TGCGGATCGACATCATCAATGACGTTATA--CCACGCATCATTGCTGTAAACTTTGGGG- 1851 || || | ||||| |||| ||| || | ||| || || | | ||||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCTT 89851378 Query 1852 CTTAAA-TCTAAATGACCGCATAAGTAATTATGAGGCCCTAATGACCTAGCCCACATCGT 1910 ||| | || | |||||| |||| ||| ||||| || || || || |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1911 TTTACCCGTACGACTGTCTCCCTCAATCACTAT--ACTTTGAGGCCTCAGAGGCCGCGCA 1968 |||||| || | || | || || | ||| |||||| | |||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTG--GTCTCATCGGCCGCGCA 89851496 Query 1969 GCGGC 1973 ||||| Sbjct 89851497 GCGGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671859210080