Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004607.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 6e-17 seq11 89.7 9e-15 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 202/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 1672 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1731 || || ||||| || | |||||||||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAA 1791 || ||| || ||||| | ||| || || || |||||||| |||| |||| | | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1792 TGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGAC--CTTGGGAC 1849 || || | |||||| |||| ||| || ||||||| | |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1850 TCAGATCCAGATGTCCGCACAAATAGTTATGTGGTCCCAGTGATCTAGCCCACATCGTCT 1909 | || |||| ||| || || | ||||||||| ||||| ||||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1910 TTCCCGTTCGACTATCTCCTTCAATTACTATACTCCGAGGTCTAAGGGGCCGCGCAGCGG 1969 | || || | ||| | ||| || | ||| | ||||| | ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1672 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1731 || || ||||| || | |||||||||||| || ||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1732 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGGAAA 1791 || || || ||||| | | ||| || || || |||||||| |||| ||| | | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1792 TGCGGGTCGACGTCATCAATGACGTTATACCAGGCGTCGTTACTGTAGACCTTGGGACTC 1851 || || | |||||| |||| ||| || |||| ||| | |||| || | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1852 AGATCCAGATGTCCGCACAAATAGTTATGTGGTCCCAGTGATCTAGCCCACATCGTCTT 1910 | |||| ||| || || | ||||||||| ||||| ||||| |||||||| || || Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694258846416