Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004608.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 1e-13 seq11 80.6 5e-12 >seq13 Length=197258317 Score = 86.0 bits (94), Expect = 1e-13 Identities = 203/301 (67%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 1814 CCAGGGTTACACAGAAAGATGGTGGGGATACCACCTTTAATTTTAGTGGGCTTCCCGTAC 1873 || ||||| || || | ||| || || || || ||||| | | | ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1874 TTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTCAAATAA 1933 ||| |||||||||||| | | ||| || || || || ||||| | || || || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1934 TGTGGATCAACGTCATCGATGACGTTGTACCATGCCTCGTT--AGAGTATGTTTTGTCGT 1991 ||||| | ||||||||||| |||||| | ||||| ||| | |||| | | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1992 TTAGATCCAAATGGCCGCAAAGATAATTATGAGGACCTATGGCACGTGCCCACATGGTTT 2051 | || |||| ||| || || | || ||||| || | | | ||||||||| |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 2052 TACCCGTGCGACTATCTCCTTCAATAACTAT--ACTAATAGGTCT-ATCTGGCCGCGCGG 2108 |||| || | ||| | ||| || | ||| ||| | ||||| ||| |||||||| | Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATC-GGCCGCGCAG 89851497 Query 2109 C 2109 | Sbjct 89851498 C 89851498 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 5e-12 Identities = 161/239 (67%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1814 CCAGGGTTACACAGAAAGATGGTGGGGATACCACCTTTAATTTTAGTGGGCTTCCCGTAC 1873 || ||||| || || | ||| || || || || ||||| | | | ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1874 TTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTCAAATAA 1933 ||| || ||||||||| | || ||| || || || || ||||| | || | || || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1934 TGTGGATCAACGTCATCGATGACGTTGTACCATGCCTCGTTAGAGTATGTTTTGTCGTTT 1993 ||||| | ||||||||||| |||||| || | ||| ||| | ||| | ||| Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1994 AGATCCAAATGGCCGCAAAGATAATTATGAGGACCTATGGCACGTGCCCACATGGTTTT 2052 | |||| ||| || || | || ||||| || | | | ||||||||| ||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8675059158128