Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004614.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 9e-15 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 202/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1693 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1752 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1753 TTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1812 ||| | || ||||| | | ||| || || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1813 GTGGGGATCGACGTCATCTATGATGTTGAACCAGGCCTCATTATTGTACACCTTTGGGCT 1872 || || | |||||| ||||||||| | || | || | | || ||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1873 AAGGTCTAGATGACCACACAAATAGTTATGCGGTCCCAGTGATCTGGCCCACATCGTCTT 1932 |||| | ||||||||| | |||||||| ||||| ||||| |||||||| || || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1933 CCCCGTTCGACTATCACCCTCTATCACTAT--ACTTATGGGTCTTAAAGGCCGCGCAGCG 1990 | || | || ||| | ||| | | | |||| ||||| | |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1991 GC 1992 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726258326896