Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004618.1 Length=2787 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 2e-16 seq11 91.5 3e-15 seq16 84.2 4e-13 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 209/305 (69%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1731 CCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTAC 1790 ||||| ||||| || | |||||| || ||||| ||||| | || | ||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1791 TTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAA 1850 || ||| ||||| | | || || || || |||||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1851 TGCGGATCGACGTCATCAATGACGTTGTAC-CAA-GCCGAATTGCTGTACACTTTTGGAC 1908 || || | |||||| |||| |||||| ||| | || ||| | | |||||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGT-TTGA-GAAGACTTTTTCTT 89851378 Query 1909 --TGAGGTCGAGATGTCCACACAAATAATTGTGTGGTCCCAATGAACGGGCCCACATTGT 1966 ||||||| | ||| ||||| | || || ||| |||||| || | ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1967 CTTGCCCGTCCGACTATCACCCTCGACTATTAT--ACTACTCGGCCTCCACGGCCGCGCA 2024 || || |||| ||||| || | ||||| ||| | || ||| |||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCA 89851496 Query 2025 GCGGC 2029 ||||| Sbjct 89851497 GCGGC 89851501 >seq11 Length=168460249 Score = 91.5 bits (100), Expect = 3e-15 Identities = 202/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1731 CCTGGATTGCACAGGAAGATTGTCGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTAC 1790 ||||| ||||| || | |||||| || ||||| ||||| | || | ||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1791 TTCGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGATAA 1850 || || ||||| | || || || || || |||||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1851 TGCGGATCGACGTCATCAATGACGTTGTACCAAGCCGAATTGCTGTACACTTTTGGACTG 1910 || || | |||||| |||| |||||| ||| || | | |||||| || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1911 AGGTCGAGATGTCCACACAAATAATTGTGTGGTCCCAATGAACGGGCCCACATTGTCTTG 1970 |||| | ||| ||||| | || || ||| |||||| || | ||||||||||| ||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1971 CCCGTCCGACTATCACCCTCGACTATTAT--ACTACTCGGCCTCCACGGCCGCGCAGCGG 2028 | |||| || ||| | | ||| | ||| | || ||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 2029 C 2029 | Sbjct 165527305 C 165527305 >seq16 Length=188620566 Score = 84.2 bits (92), Expect = 4e-13 Identities = 164/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 1765 CTTTAATTTGAATCGGCTTCCCGTACTT-CGTGTTGCTTTGCCAGTCACGCTGGGCCCCC 1823 |||| || |||| ||| || | |||||| | |||||| ||||||| | || || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1824 ATGAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTA--CC 1881 | || || || |||| |||| | | || || | |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1882 AAGCCGAATTGCTGTACACTTTTGGACTGAGGTCGAGATGTCCACACAAATAATTGTGTG 1941 | || || | | || | ||| | | ||| | || |||| |||||||| ||| Sbjct 2249214 ACATCG--TTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1942 GTCCCAATGAACGGGCCCACATTGTCTTGCCCGTCCGACTATCACCCTCGACTATTAT 1999 ||||||||| | |||||||||||||| || || | |||||| || | |||||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTAT 2249099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8806252823040