Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_004625.1
Length=2802
Score E
Sequences producing significant alignments: (Bits) Value
seq13 100 5e-18
seq11 87.8 3e-14
>seq13
Length=197258317
Score = 100 bits (110), Expect = 5e-18
Identities = 205/302 (68%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 1736 CCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAATTTGAATGGGCTTTCCGTAT 1795
|| || ||||||| | ||| || || || || ||||| | || | ||||| |||||
Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260
Query 1796 TTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTCTTTGAAATGCTTTAGATAA 1855
|| ||| || ||||||| | |||| || || || || ||||| | ||||| | ||
Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320
Query 1856 TGCGGGTCTACGTCGTCAATGACGTTGTACCATGCGTCGTTTGAATATA--TCTTGGGAG 1913
|| || || ||| || |||| |||||| |||||||||| | | | ||
Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380
Query 1914 ACAGATCCAGGTGTCCACATAGATAGTTATGTGGGCCCAGAGATCGGGCCCACATCGTCT 1973
|| |||| || ||||||| ||||||||| |||| ||||| |||||||| || |
Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440
Query 1974 TCCCGGTTCGGCTATCACCTTCGAGAACAATACTGA--TCGGTCTCCATGGCCGCGCAGC 2031
| || || | | ||||| ||| | | || ||| | |||||| |||||||||||
Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTAT--TGACTTTGGTCTCATCGGCCGCGCAGC 89851498
Query 2032 GG 2033
||
Sbjct 89851499 GG 89851500
>seq11
Length=168460249
Score = 87.8 bits (96), Expect = 3e-14
Identities = 203/302 (67%), Gaps = 8/302 (3%)
Strand=Plus/Minus
Query 1736 CCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAATTTGAATGGGCTTTCCGTAT 1795
|| || ||||||| | ||| || || || || ||||| | || | ||||| ||||||
Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544
Query 1796 TTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTCTTTGAAATGCTTTAGATAA 1855
|| || || ||||||| |||||| || || || || ||||| | ||| | | ||
Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484
Query 1856 TGCGGGTCTACGTCGTCAATGACGTTGTACCATGCGTCGTTTGAATATA--TCTTGGGAG 1913
|| || || ||| || |||| |||||| |||| |||||| | | | || | |
Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424
Query 1914 ACAGATCCAGGTGTCCACATAGATAGTTATGTGGGCCCAGAGATCGGGCCCACATCGTCT 1973
| |||| || ||||||| ||||||||| |||| ||||| |||||||| || |
Sbjct 165527423 T--GGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366
Query 1974 TCCCGGTTCGGCTATCACCTTCGAGAACAATACTGA--TCGGTCTCCATGGCCGCGCAGC 2031
| | || | | || ||||| | | | ||| | |||||| |||||||||||
Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCGGCCGCGCAGC 165527308
Query 2032 GG 2033
||
Sbjct 165527307 GG 165527306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8854252020840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |