Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004625.1 Length=2802 Score E Sequences producing significant alignments: (Bits) Value seq13 100 5e-18 seq11 87.8 3e-14 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 1736 CCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAATTTGAATGGGCTTTCCGTAT 1795 || || ||||||| | ||| || || || || ||||| | || | ||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1796 TTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTCTTTGAAATGCTTTAGATAA 1855 || ||| || ||||||| | |||| || || || || ||||| | ||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1856 TGCGGGTCTACGTCGTCAATGACGTTGTACCATGCGTCGTTTGAATATA--TCTTGGGAG 1913 || || || ||| || |||| |||||| |||||||||| | | | || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1914 ACAGATCCAGGTGTCCACATAGATAGTTATGTGGGCCCAGAGATCGGGCCCACATCGTCT 1973 || |||| || ||||||| ||||||||| |||| ||||| |||||||| || | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1974 TCCCGGTTCGGCTATCACCTTCGAGAACAATACTGA--TCGGTCTCCATGGCCGCGCAGC 2031 | || || | | ||||| ||| | | || ||| | |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTAT--TGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 2032 GG 2033 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 203/302 (67%), Gaps = 8/302 (3%) Strand=Plus/Minus Query 1736 CCCGGATTGCATAAGAAGATGGTGGGAATCCCACCTTTAATTTGAATGGGCTTTCCGTAT 1795 || || ||||||| | ||| || || || || ||||| | || | ||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1796 TTTGTGTTTGATTGCCAATCTCGTTGGGCCCCCATGAATTCTTTGAAATGCTTTAGATAA 1855 || || || ||||||| |||||| || || || || ||||| | ||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1856 TGCGGGTCTACGTCGTCAATGACGTTGTACCATGCGTCGTTTGAATATA--TCTTGGGAG 1913 || || || ||| || |||| |||||| |||| |||||| | | | || | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1914 ACAGATCCAGGTGTCCACATAGATAGTTATGTGGGCCCAGAGATCGGGCCCACATCGTCT 1973 | |||| || ||||||| ||||||||| |||| ||||| |||||||| || | Sbjct 165527423 T--GGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1974 TCCCGGTTCGGCTATCACCTTCGAGAACAATACTGA--TCGGTCTCCATGGCCGCGCAGC 2031 | | || | | || ||||| | | | ||| | |||||| ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGT--TGACTTTGGTCTCATCGGCCGCGCAGC 165527308 Query 2032 GG 2033 || Sbjct 165527307 GG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8854252020840