Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004626.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq16 127 4e-26 seq13 102 1e-18 seq11 87.8 3e-14 >seq16 Length=188620566 Score = 127 bits (140), Expect = 4e-26 Identities = 194/269 (72%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 1719 CTTTAATTTGAATTGGTTTCCCGTATTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1776 |||| || |||| ||||| | ||| || | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1777 CATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATA--C 1834 | ||||| || |||| |||| | | || |||| |||| |||||| |||||||| | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1835 CAAGCATCATTACTGTATACTTTTGGACTCAGATCTAGATGACCGCACAAATAATTATGT 1894 || |||| ||| | | || | ||| ||| |||| || ||| | |||||||||||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1895 GGTCCCAGTGACCTGGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAAT- 1953 ||||| ||| || ||||||||||| || || || | ||||||||| || | || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1954 -ACTGATGGGTCTCCATGGCCGCGCAGCG 1981 ||||| |||||| |||| || | |||| Sbjct 2249097 GACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 206/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1685 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAT 1744 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1745 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1804 || ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1805 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGAC-- 1862 || || || |||||| |||| ||| || | | || || | | |||||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1863 TCAGATCTAGATGACCGCACAAATAATTATGTGGTCCCAGTGACCTGGCCCACATTGTTT 1922 | || || | |||||| || | || |||||| ||||| || || ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1923 TACCAGTACGACTATCACCTTCTATCACAAT--ACTGATGGGTCTCCATGGCCGCGCAGC 1980 |||| || | ||||| |||||| | || ||| | |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAGC 89851498 Query 1981 GGC 1983 ||| Sbjct 89851499 GGC 89851501 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 201/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1685 CCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTAT 1744 ||||| ||||| || | ||| ||||| || || ||||| | || |||| || |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1745 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1804 || || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1805 TGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGACTC 1864 || || || |||||| |||| ||| || ||| | || | | |||||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1865 AGATCTAGATGACCGCACAAATAATTATGTGGTCCCAGTGACCTGGCCCACATTGTTTTA 1924 | || | |||||| || | || |||||| ||||| || || |||||||||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1925 CCAGTACGACTATCACCTTCTATCACAAT--ACTGATGGGTCTCCATGGCCGCGCAGCGG 1982 | || | || ||||| ||| | | ||| | |||||| ||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 1983 C 1983 | Sbjct 165527305 C 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662259365936