Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004627.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq16 122 2e-24 seq13 102 1e-18 seq11 84.2 4e-13 >seq16 Length=188620566 Score = 122 bits (134), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1722 CTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1781 |||| || |||| ||||| | ||||||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1782 TGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATA--CCA 1839 ||||| || |||| |||| | | || |||| |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1840 AGCATCATTACTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGG 1899 |||| ||| | | ||| | ||| ||| |||| || ||| | | |||||||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1900 TCCCAGTGATCTGGCCCACATTGTTTTACCAGT 1932 ||||| |||||| ||||||||||| || || || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq13 Length=197258317 Score = 102 bits (112), Expect = 1e-18 Identities = 209/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1687 TCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTA 1746 |||||| ||||| || | ||| ||||| || || ||||| | || |||| || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1747 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1806 ||| ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1807 GTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTACACCTTTGGAC- 1865 || || || |||||| |||| ||| || | | || || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1866 -TCAGATCTAGATGACCGCACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTT 1924 | || || | |||||| || | || |||||| ||||| ||||| |||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1925 TTACCAGTAC--GACTCTCTCCCTCTATGACAAT--ACTTTTGGGTCTCCAAGGCCGCGC 1980 ||||| || | || || || ||||||| || ||||| |||||| |||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACT--TTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1981 AGCGGC 1986 |||||| Sbjct 89851496 AGCGGC 89851501 >seq11 Length=168460249 Score = 84.2 bits (92), Expect = 4e-13 Identities = 201/302 (67%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 1687 TCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTA 1746 |||||| ||||| || | ||| ||||| || || ||||| | || |||| || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1747 CTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATA 1806 ||| || ||||| | | ||| || || || || ||||| ||||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1807 GTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTACACCTTTGGACT 1866 || || || |||||| |||| ||| || ||| | || | | || ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1867 CAGATCTAGATGACCGCACAGATAATTATGTGGTCCCAGTGATCTGGCCCACATTGTTTT 1926 | || | |||||| || | || |||||| ||||| ||||| |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1927 ACCAGTACGACTCTCTCCCTCTATGACAAT--ACTTTTGGGTCTCCAAGGCCGCGCAGCG 1984 | || | | || | ||||| | ||||| |||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1985 GC 1986 || Sbjct 165527306 GC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8639859729600