Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004628.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq13 89.7 9e-15 seq11 87.8 3e-14 >seq13 Length=197258317 Score = 89.7 bits (98), Expect = 9e-15 Identities = 204/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 1693 TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1752 |||||| ||||| || | ||| | || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1753 TTTAGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1812 ||| || || ||||| | ||| || || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1813 GTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTAGACCTTTGGGC- 1871 || || | |||||| |||| |||||| |||| || | |||| ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1872 -TAAGGTCGAGATGTCCACACAAATAGTTGTGTGGACCCAATGACCTGGCCCATATCGTC 1930 | ||||| | ||| ||||| | ||||| ||| ||||| || || ||||| || || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1931 TTCCCCGTCCTACTCTCACCCTCTATGACAAT--ACTTATGGGTCTTAAAGGCCGCGCAG 1988 || || ||||| |||| ||||||| || |||| ||||| | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCAG 89851497 Query 1989 CGGC 1992 |||| Sbjct 89851498 CGGC 89851501 >seq11 Length=168460249 Score = 87.8 bits (96), Expect = 3e-14 Identities = 204/304 (67%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 1693 TCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1752 |||||| ||||| || | ||| | || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1753 TTT--AGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGG 1810 ||| |||| || ||||| | | ||| || || || || || || ||||| | | | Sbjct 165527544 TTTGCAGTAA--GACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAG 165527487 Query 1811 TAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCATTACTGTAGACCTTTGGG 1870 || || || | |||||| |||| |||||| |||| || | |||| ||| | Sbjct 165527486 TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 165527427 Query 1871 CTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGACCCAATGACCTGGCCCATATCGTC 1930 | |||| | ||| ||||| | ||||| ||| ||||| || || ||||| || || Sbjct 165527426 TTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTT 165527367 Query 1931 TTCCCCGTCCTACTCTCACCCTCTATGACAAT--ACTTATGGGTCTTAAAGGCCGCGCAG 1988 || | ||||| | ||| | ||||| | |||| ||||| | |||||||||| Sbjct 165527366 TTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAG 165527309 Query 1989 CGGC 1992 |||| Sbjct 165527308 CGGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703858690560