Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004634.1 Length=2731 Score E Sequences producing significant alignments: (Bits) Value seq16 104 4e-19 seq13 104 4e-19 seq11 95.1 2e-16 >seq16 Length=188620566 Score = 104 bits (114), Expect = 4e-19 Identities = 179/257 (70%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 1700 CTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCA 1759 |||| || ||||| || || | ||| || || | ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1760 TGAACTCCTTAAAGTGCTTAAGAAAGTGCGGGTCGACGTCATCAATGACGTTGTA--CCA 1817 || ||||| |||| || | | | || |||| |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1818 TGCGTCGTTGCTGTAGACCTTTGGACTCAGATCTAGATGCCCACACAGATAGTTATGTGG 1877 | ||||| | | ||| | ||| ||| |||| || |||| | ||| |||||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1878 GCCTAGTGACCTGGCCCACATTGTCTTCCCGGTTCGACTATCTCCCTCGATGACTATACT 1937 || | ||| || |||||||||||||| ||||||| ||| || || || | ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1938 TTGAGGTCT-AAGGGGC 1953 |||||||| || |||| Sbjct 2249095 CTGAGGTCTCAATGGGC 2249079 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 210/305 (69%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 1666 CCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1725 || || |||||||| | |||||| ||||| || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1726 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTT-AAGAAA 1784 || ||| || ||||| | ||| || || || ||||| || ||||||| ||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1785 -GTGCGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTGCTGTAGACCTTTGGAC 1843 ||| ||| | |||||| |||| |||||| ||||||| | |||| ||| Sbjct 89851321 TGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1844 --TCAGATCTAGATGCCCACACAGATAGTTATGTGGGCCTAGTGACCTGGCCCACATTGT 1901 | || || | ||| ||||| | ||||||||| || | || || ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1902 CTTCCCGGTTCGACTATCTCCCTCGATGACTAT--ACTTTGAGGTCTAAGGGGCCGCGCA 1959 || || || | ||| | || |||| ||| ||||| ||||| | ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGCA 89851496 Query 1960 GCGGC 1964 ||||| Sbjct 89851497 GCGGC 89851501 Score = 84.2 bits (92), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 2257 TCTCCGTCTTTCTTAATGTAGGTTTTGACATCG---CTTGAGCTTTTAGCTCCCTGAATG 2313 || |||||||||| ||||| || ||||| | || || |||||| ||| ||| Sbjct 172134367 TCACCGTCTTTCTGCATGTATCTTCTGACAAAGAAACTGGA---TTTAGCAGACTGTATG 172134423 Query 2314 TTTGGATGGAAATGTGCTGACCTGCTTGGG-GATGTGAGGTCAAAGAATCTGTTGTTTTG 2372 | |||||| || | | ||| | ||||| ||| |||||||||||||||| ||||| Sbjct 172134424 TATGGATGACAAATTTCAGACGTATTTGGGTGAT-TGAGGTCAAAGAATCTTGGATTTTG 172134482 Query 2373 GCATTTGAATTTTCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATTTTCATG 2432 ||||||||||| ||| | ||| || | |||||| | ||||| | | | ||| || Sbjct 172134483 ACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTG 172134542 Query 2433 AAGCTCTCTGCAGAT 2447 || ||| ||||||| Sbjct 172134543 CAGTTCTATGCAGAT 172134557 >seq11 Length=168460249 Score = 95.1 bits (104), Expect = 2e-16 Identities = 206/303 (68%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 1666 CCAGGATTGCATAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1725 || || |||||||| | |||||| ||||| || ||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1726 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCTT-AAGAAA 1784 || || || ||||| | | ||| || || || ||||| || ||||| | ||| | Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1785 -GTGCGGGTCGACGTCATCAATGACGTTGTACCATGCGTCGTTGCTGTAGACCTTTGGAC 1843 ||| ||| | |||||| |||| |||||| |||| ||| | |||| ||| Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1844 TCAGATCTAGATGCCCACACAGATAGTTATGTGGGCCTAGTGACCTGGCCCACATTGTCT 1903 | | || | ||| ||||| | ||||||||| || | || || ||||||||||| | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1904 TCCCGGTTCGACTATCTCCCTCGATGACTAT--ACTTTGAGGTCTAAGGGGCCGCGCAGC 1961 | | || | || || | |||| | | ||||| ||||| | ||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGC 165527308 Query 1962 GGC 1964 ||| Sbjct 165527307 GGC 165527305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8630259885456