Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004635.2 Length=2608 Score E Sequences producing significant alignments: (Bits) Value seq16 143 4e-31 seq13 134 2e-28 seq11 118 2e-23 >seq16 Length=188620566 Score = 143 bits (158), Expect = 4e-31 Identities = 232/334 (69%), Gaps = 6/334 (2%) Strand=Plus/Minus Query 1575 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCA 1634 |||| || ||||| || || | ||| ||||| |||| |||||||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1635 GAAGTTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1694 | | ||| |||||||| |||| | |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1695 ATTCCACTTCATTTGAAAAGACCCGGGAATTGAAGTCTAAGTGTCCACTGAGATAATTGT 1754 ||||||| || || || || ||| | ||| |||||||| | ||||| | |||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1755 GTGGGCCTAAGGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCGCCTTCAATTATGA 1814 || || || | | |||||||| ||||| || || || || || ||||||||||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1815 TACTCACAGGCCTCTCCGGCCGCGCAGCGGCATCTGTTCCAAAATAACCGTCTGACCATG 1874 | | ||| ||| || || | |||| || | | ||||||| | |||| |||| Sbjct 2249099 TTGACTGAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCATT 2249040 Query 1875 CTTGCATCTCGTCTGGAACGGCATTGAAAGAGGA 1908 |||||| | | ||| ||| ||||||| || Sbjct 2249039 TTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 134 bits (148), Expect = 2e-28 Identities = 244/355 (69%), Gaps = 8/355 (2%) Strand=Plus/Plus Query 1541 CCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTAT 1600 || || ||||| || | ||||| ||| || |||||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1601 TTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTT 1660 ||||| || |||||||| | | || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1661 AGATATTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCATTTGAAAAGAC--CC 1718 || ||||| |||| | |||||| |||| ||| || || || || ||||| ||||| Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1719 GGGAATTGAAGTCTAAGTGTCCACTGAGATAATTGTGTGGGCCTAAGGCACGAGCCCACA 1778 |||| ||| | || |||| | || || ||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1779 TCGTCTTCCCTGTCCTCGAGTCGCCTTCAATTATGATACTCACAGGCCTCTCCGGCCGCG 1838 | || || |||||||| || || | ||| || || || | || ||| |||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1839 CAGCGGCATCTGTTCCAAAATAACCGTCTGACCATGCTTGCATCTCGTCTGGAAC 1893 ||||||| | | |||||| || |||| |||| ||||| || ||||| || Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTAC 89851549 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 248/365 (68%), Gaps = 16/365 (4%) Strand=Plus/Minus Query 1534 ACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTT 1593 |||| | || || ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1594 GCCGTATTTGCAATTTGACTGCCAGTCCTTC--TGGGCCCCCAGAAGTTCTTTCCAGTGC 1651 |||||||||||| | |||||||| | ||| || || || | || |||||||||||| Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGC 165527493 Query 1652 TTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCATTTGAA 1711 | | || ||||| |||| | |||||| |||| ||| || || | | ||||| Sbjct 165527492 ATGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1712 AAGACCCGGGAATTGAAGTCTAAGTGTCCACTGAGATAATTGTGTGGGCCTAAGGCACGA 1771 ||||| ||| ||| | || |||| | || || ||| || || | | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1772 GCCCACATCGTCTTCCCTGTCCTCGAGTCGCCTTCAATTATGATACT---CACAGGCCTC 1828 |||||||| || || | |||||| || | |||| ||||||| | | || ||| Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACTTTGGTCTC 165527322 Query 1829 TCCGGCCGCGCAGCGGCATCTGTTCCAAAATAACCGTCTGACCATGCTTGCATCTCGTCT 1888 ||||||||||||||| | | ||||| || |||| |||| |||||| || ||| Sbjct 165527321 ATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 1889 GGAAC 1893 || || Sbjct 165527261 GGTAC 165527257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8236666275552