Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004637.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq16 161 2e-36 seq13 156 7e-35 seq11 138 2e-29 >seq16 Length=188620566 Score = 161 bits (178), Expect = 2e-36 Identities = 240/337 (71%), Gaps = 9/337 (3%) Strand=Plus/Minus Query 1647 CTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTTGACTGCCAGTCTTTTTGAGCACC 1706 |||| || ||||| || |||| ||| ||| || |||| ||||||||| |||| ||||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTA-CTTG-CACTTTGCTTGCCAGTCTCTTTGTGCACC 2249276 Query 1707 AATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTGGGGTGTGACATCATCGATGACGT 1766 || | ||| |||||||| ||||| | |||| || | || | ||| || |||| Sbjct 2249275 AAGTAATTCC-TTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGT 2249223 Query 1767 TGTATTCCACTTCGTTTGAATAGACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAAT 1826 | |||||||| ||||| || | ||| ||| ||| ||||| | || ||||| || |||| Sbjct 2249222 TATATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAAT 2249163 Query 1827 TATGTGGGCCTAACGAACGAGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTA 1886 ||||| || || || | |||||||||||||| || || |||||||||||||| | || Sbjct 2249162 TATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTA 2249103 Query 1887 TCAAACTCATAGGTCTCAATGGCCGCGCAGCTGAACCCCTCCCAAAATAATCGTCCGCCC 1946 | | | |||||||||||| || | ||| | ||||||||| || |||| Sbjct 2249102 TTATTGACTGAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 1947 ACTCTTGCATCTCGACGGGAACGTTAGTGAAGGAGGA 1983 | | |||||| | || ||||| ||||| || || Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 156 bits (172), Expect = 7e-35 Identities = 257/368 (70%), Gaps = 11/368 (3%) Strand=Plus/Plus Query 1613 CCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAA 1672 || || ||||| || | ||||| |||||| || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA- 89851259 Query 1673 CTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAAC 1732 || || || |||||||| | || |||||| ||||| | ||| ||||||||||| || Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCT-TTCCAGTGCTTGAAG 89851317 Query 1733 TTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGACC 1792 | |||| |||| | |||||||||| |||||| || || |||||||| |||| Sbjct 89851318 T------ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACT 89851371 Query 1793 TTAGAAT--TGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCC 1850 || | ||| ||||| ||| |||| | ||| |||||| || || || | |||| Sbjct 89851372 TTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCC 89851431 Query 1851 ACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCTCAATGGCC 1910 ||||||| || |||||||| ||||||| ||| | || | | | ||||||| |||| Sbjct 89851432 ACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCC 89851491 Query 1911 GCGCAGCTGAACCCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGACGGGAACGT 1970 ||||||| | ||||| || || ||||| | ||||| || | || || | Sbjct 89851492 GCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACAT 89851551 Query 1971 TAGTGAAG 1978 |||||||| Sbjct 89851552 TAGTGAAG 89851559 Score = 87.8 bits (96), Expect = 3e-14 Identities = 164/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 1739 TATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGACCTTAGAA 1798 ||||| |||| | |||||||||| |||||| || | | |||||| |||| || Sbjct 172133891 TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTG 172133950 Query 1799 TTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTC 1858 |||| ||||| || |||| | ||| |||||| || | || | ||||||||||| Sbjct 172133951 TTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCACATTGTT 172134009 Query 1859 TTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCTCAATGGCCGCGCAGCT 1918 || ||||| || |||| |||||| | || | | | ||||||| ||||| ||||| Sbjct 172134010 TTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTTTGGTCTCACCGGCCGTGCAGCG 172134069 Query 1919 GAACCCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGACGGGAACGTTAGTGAAG 1978 | | ||||| || || ||||| ||||||| || | | || ||||||||| Sbjct 172134070 GCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACATTAGTGAAG 172134129 >seq11 Length=168460249 Score = 138 bits (152), Expect = 2e-29 Identities = 255/372 (69%), Gaps = 9/372 (2%) Strand=Plus/Minus Query 1607 CCCTCCCCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTT 1666 ||| | || || ||||| |||| ||||| |||||| || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1667 CCGTAACTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGC 1726 ||||| || || | |||||||| | | |||||| ||||| | ||| ||||||||| Sbjct 165527549 CCGTA--TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCT-TTCCAGTGC 165527493 Query 1727 TTTAACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAA 1786 | || | |||| |||| | |||||||||| |||||| || | | |||||| Sbjct 165527492 ATGAAGT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAG 165527439 Query 1787 TAGACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGA 1846 |||| || ||| ||||| ||| |||| | ||| |||||| || || || | Sbjct 165527438 AAGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTT 165527379 Query 1847 GCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCTCAAT 1906 ||||||||||| || | |||||| |||| ||||| | || | | ||||||| Sbjct 165527378 GCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATC 165527319 Query 1907 GGCCGCGCAGCTGAACCCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGACGGGA 1966 ||||||||||| | ||||| || || ||||| ||||||| || | || Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 1967 ACGTTAGTGAAG 1978 || ||||||||| Sbjct 165527258 ACATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8428663158432