Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004638.1 Length=2582 Score E Sequences producing significant alignments: (Bits) Value seq16 165 1e-37 seq13 131 3e-27 seq11 118 2e-23 >seq16 Length=188620566 Score = 165 bits (182), Expect = 1e-37 Identities = 239/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1559 CTTTAATTTGAACGGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGA 1618 |||| || ||||| || |||| ||||||||| |||| |||||| ||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1619 GAAGTTCTTTCCAGTGCTTTAACTTTAGGTATTGCGGTGCGACGTCATCAATGACGTTAT 1678 | | ||| |||||||| ||||| |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAAC------ATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1679 ACTCCACTCCATTCGAATAGACCCTAGAATTGAAATCGAGATGACCGCTCAAGTAATTAT 1738 | ||||| | || || | ||| ||| ||| || || | || ||| || || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1739 GTGGGCCTAAGACCCGTGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGA 1798 || || || | ||||||||| ||||| || |||| || ||||| |||||||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1799 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGCACCCCTTCCGAAATAATTATCTGCCCA 1856 | ||| | |||||| || || | |||| | | ||||||| ||||||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1857 CTCTTGCATCTCGTCAGGCACGTTAGTGAAAGAAGA 1892 | |||||| | | || ||||| ||||||||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 131 bits (144), Expect = 3e-27 Identities = 255/374 (68%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 1517 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCT 1576 |||| | || || ||||| || | ||||| ||| || |||||||| | || |||| Sbjct 89851193 AACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCT 89851252 Query 1577 TTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCT 1636 | |||| ||||| || || ||||||| || ||| || || | || ||||||||||||| Sbjct 89851253 TGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCT 89851312 Query 1637 TTAACTTTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAAT 1696 | || |||||| |||| | |||||| |||| ||| || || || | || || Sbjct 89851313 TGAA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1697 AGAC--CCTAGAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCG 1754 |||| | |||| || | |||||| | | ||| |||||| || || | Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1755 TGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGAT--ACTAATAGGTCTC 1812 ||||||||| || || || || | || |||| || || || || ||| | |||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTC 89851484 Query 1813 TCCGGCCGCGCAGCGGCACCCCTTCCGAAATAATTATCTGCCCACTCTTGCATCTCGTCA 1872 ||||||||||||||| ||| || || ||||||||| | ||||| || || Sbjct 89851485 ATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCT 89851544 Query 1873 GGCACGTTAGTGAA 1886 || || |||||||| Sbjct 89851545 GGTACATTAGTGAA 89851558 >seq11 Length=168460249 Score = 118 bits (130), Expect = 2e-23 Identities = 252/375 (67%), Gaps = 16/375 (4%) Strand=Plus/Minus Query 1517 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACGGGCT 1576 ||||| | || || ||||| |||| ||||| ||| || |||||||| | || |||| Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552 Query 1577 TTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCGAGAAGTTCTTTCCAGTGCT 1636 | ||||| ||||| | || ||||||| | ||| || || | || |||||||||||| Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1637 TTAACTTTAGGTATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTCCATTCGAAT 1696 | || |||||| |||| | |||||| |||| ||| || || | || || Sbjct 165527491 TGAA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA 165527438 Query 1697 AGACCCTAGAATTGAAATCGAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGTG 1756 |||| | ||| || | |||||| | | ||| |||||| || || | || Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1757 CCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAATTATGAT-----ACTAATAGGTCT 1811 ||||||| || |||| || | || | ||| | ||||||| ||| | ||||| Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCT 165527323 Query 1812 CTCCGGCCGCGCAGCGGCACCCCTTCCGAAATAATTATCTGCCCACTCTTGCATCTCGTC 1871 | ||||||||||||||| || || || ||||||||| ||||||| || || Sbjct 165527322 CATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTC 165527263 Query 1872 AGGCACGTTAGTGAA 1886 || || |||||||| Sbjct 165527262 TGGTACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8153467626304