Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004639.1 Length=2661 Score E Sequences producing significant alignments: (Bits) Value seq16 192 1e-45 seq13 165 1e-37 seq11 138 2e-29 >seq16 Length=188620566 Score = 192 bits (212), Expect = 1e-45 Identities = 245/335 (73%), Gaps = 8/335 (2%) Strand=Plus/Minus Query 1649 CTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAA 1708 |||| || ||||| || |||| |||||| || |||| ||||||||| |||| ||||||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1709 TCAGCTCCTTCCAGTGCTTTAACTTTAGATATTGCGGAGTGACATCATCAATGACGTTAT 1768 | ||||||||||| ||||| | |||| || | || | |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1769 AATCCACTTCGTTTGAGTAAACCCTATTATTGAAGTCCAGATGTCCACTTAAGTAATTAT 1828 | ||||| ||||| ||| ||||| || ||| ||||| | || |||||||| ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1829 GT-GGGCTAATGCACGAGCCCACATCGTCTTTCCCTGTCCTTGAATCACCTTCCACTATC 1887 || | |||| | |||||||| |||||| || || |||||||||||||| | ||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTT-CCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 1888 AAACTCATAGGTCTCAATGGCCGCGCAGCGGAACCCCTCCCAAAATAATCATCCGCCCAC 1947 | | |||||||||||| || | |||| | |||||||||||| ||||| Sbjct 2249100 ATTGACTGAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCAT 2249041 Query 1948 TCTTGCATCTCGTCGGGAACGTTAGTGAAGGAGGA 1982 | |||||| | | || ||||| ||||| || || Sbjct 2249040 TTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 165 bits (182), Expect = 1e-37 Identities = 328/480 (68%), Gaps = 22/480 (5%) Strand=Plus/Plus Query 1525 AGGAAGATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACC-----TGCATTCTCCT 1579 ||||||||||| ||||||| | ||| |||||| | || ||||| ||||| | Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAGACCCAACATGCATGGT--- 89851167 Query 1580 CTTTGTCGAG-GAACTCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGAT 1638 || || || || | | ||| | || |||| || ||||| || | ||||| | Sbjct 89851168 -TTGTTCAAGTGATCCCAATATGAAAAACCAACTCCT--GGGTTGCATAGTATGATTGTT 89851224 Query 1639 GGGATTCCACCTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGACTGCCAGTCTTTT 1698 || || || ||||| | || |||||| |||| || || || |||||||| | || | Sbjct 89851225 GGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGT 89851284 Query 1699 TGAGCACCAATCAGCTCCTTCCAGTGCTTTAACTTTAGATATTGCGGAGTGACATCATCA 1758 ||||| ||||| | ||| ||||||||||| || ||||| || | | ||||| Sbjct 89851285 TGAGCTCCAATAAACTCTTTCCAGTGCTTGAA------GTATTGTGGTGGTATGTCATCG 89851338 Query 1759 ATGACGTTATAATCCACTTCGTTTGAGTAAAC--CCTATTATTGAAGTCCAGATGTCCAC 1816 |||| ||| ||||| || ||||||||| | || | || |||| ||||| ||| |||| Sbjct 89851339 ATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCAC 89851398 Query 1817 TTAAGTAATTATG-TGGGCTAATGCACGAGCCCACATCGTCTTTCCCTGTCCTTGAATCA 1875 || ||| ||||| | | || | | |||||||| || ||| |||||||| |||||| Sbjct 89851399 ATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT-TTTACCTGTCCTGGAATCA 89851457 Query 1876 CCTTCCACTATCAAACTCATAGGTCTCAATGGCCGCGCAGCGGAACCCCTCCCAAAATAA 1935 | ||| | || | | | ||||||| ||||||||||||| ||||| || Sbjct 89851458 CTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTAT 89851517 Query 1936 TCATCCGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAAGGAGGAGAGTGGAAACGGA 1995 ||| ||||| | ||||| || || || || ||||||||| || | ||| || ||| Sbjct 89851518 GAATCTGCCCATTATTGCAGGTCTTCTGGTACATTAGTGAAGCTTGATAATGGGAATGGA 89851577 >seq11 Length=168460249 Score = 138 bits (152), Expect = 2e-29 Identities = 254/370 (69%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 1609 CCCTCCCCAGGATTGCAGAGCACGATTGATGGGATTCCACCTTTAATTTGAACTGGCTTT 1668 ||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1669 CCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCTTCCAGTGCTTT 1728 ||||| || || | |||||||| | | |||||| ||||| | ||| ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1729 AACTTTAGATATTGCGGAGTGACATCATCAATGACGTTATAATCCACTTCGTTTGAGTAA 1788 || | |||| || | | ||||| |||| ||| || || | | ||||||| | Sbjct 165527489 AAGT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1789 ACCCTATTATTGAAGTCCAGATGTCCACTTAAGTAATTATGTGGGCT-AATGCACGAGCC 1847 || | || ||| ||||| ||| |||| || ||| |||||| | || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1848 CACATCGTCTTTCCCTGTCCTTGAATCACCTTCCACTATCAAACTCATAGGTCTCAATGG 1907 ||||| || ||| | |||||| |||| ||||| | || | | ||||||| || Sbjct 165527375 CACATTGT-TTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGG 165527317 Query 1908 CCGCGCAGCGGAACCCCTCCCAAAATAATCATCCGCCCACTCTTGCATCTCGTCGGGAAC 1967 ||||||||||| ||||| || ||| ||||| ||||||| || || || || Sbjct 165527316 CCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 Query 1968 GTTAGTGAAG 1977 ||||||||| Sbjct 165527256 ATTAGTGAAG 165527247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8406263522096