Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004642.1 Length=2593 Score E Sequences producing significant alignments: (Bits) Value seq16 174 3e-40 seq13 149 1e-32 seq11 145 1e-31 >seq16 Length=188620566 Score = 174 bits (192), Expect = 3e-40 Identities = 241/336 (72%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1575 CTTTAATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAA 1634 |||| || ||||| || || | ||| ||||| |||| ||||||||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1635 TCAGCTCTTTCCAATGCTTCATCTTTAAATATTGCGGAGTGATGTCATCAATGACGTTGT 1694 | || ||||| || || |||| |||| || | | || |||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTT------TAAACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1695 ATTCCGCTTCATTTGAGTAAACCCTAGAATTGAAATCTAGGTGTCCACTCAAATAATTGT 1754 ||||| | || || ||| ||||| ||| ||| || |||| | ||||| |||||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1755 GTGGGCCTAAGGCACGCGCCCACATTGTCTTTCCCGTCCTCGATTCACCCTCGATGATTA 1814 || || || | | ||||||||||||||||| || || || ||||| || || |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1815 T--ACTTATAGGTCTCTCCGGCCGCGCAGCGGCATCCCTACCAAAATAATCATCTGCCCA 1872 | ||| ||||||| || || | |||| || |||||||||||||||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1873 TTCTTGCATCTCGTCCGGAACGTTCGTGAACGACGA 1908 || |||||| | | || ||||||||||| || || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 149 bits (164), Expect = 1e-32 Identities = 254/366 (69%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1541 CCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTAATTTGAACTGGCTTCCCGTAT 1600 || || ||||| || | ||||| ||||| || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1601 TTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGCTTCATCTTT 1660 ||||| || || ||||| | | ||| || ||||| | ||||||||| ||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1661 AAATATTGCGGAGTGATGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAACCCTA 1720 | ||||| || | |||||||| |||| |||||| || | || |||||| | || | Sbjct 89851316 -AGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1721 GAAT--TGAAATCTAGGTGTCCACTCAAATAATTGTGTGGGCCTAAGGCACGCGCCCACA 1778 | ||| || | || |||| | || || ||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1779 TTGTCTTTCCCGTCCTCGATTCACCCTCGATGATTAT--ACTTATAGGTCTCTCCGGCCG 1836 |||| || || ||||| || |||| || |||||||| ||| | |||||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1837 CGCAGCGGCATCCCTACCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAACGTT 1896 ||||||||| | ||||| || ||||||||||| ||||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 1897 CGTGAA 1902 ||||| Sbjct 89851553 AGTGAA 89851558 Score = 100 bits (110), Expect = 5e-18 Identities = 173/248 (70%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 1657 CTTTAAATATTGCGGAGTGATGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAAAC 1716 ||| || ||||| || | |||||||| |||| |||||| || || | |||||| | || Sbjct 172133884 CTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 172133943 Query 1717 CCTAGAATTGAAATCTAGGTGTCCACTCAAATAATTGTGTGGGCCTAAGGCACGCGCCCA 1776 | |||| || | || |||| | || || ||| || | || | ||||| Sbjct 172133944 TTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCA 172134002 Query 1777 CATTGTCTTTCCCGTCCTCGATTCACCCTCGATGATTA--TACTTATAGGTCTCTCCGGC 1834 |||||| || || || || || | ||| || ||||||| ||| | |||||| ||||| Sbjct 172134003 CATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACT--TTGGTCTCACCGGC 172134060 Query 1835 CGCGCAGCGGCATCCCTACCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAACG 1894 || |||||||| | ||||||| || ||||||||||||||||| || || | || Sbjct 172134061 CGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTACA 172134120 Query 1895 TTCGTGAA 1902 || ||||| Sbjct 172134121 TTAGTGAA 172134128 >seq11 Length=168460249 Score = 145 bits (160), Expect = 1e-31 Identities = 255/370 (69%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1535 CCCTCACCAGGATTGCAGAGCACGATTGACGGTATTCCCCCTTTAATTTGAACTGGCTTC 1594 ||| | || || ||||| |||| ||||| ||||| || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1595 CCGTATTTGCAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGCTTC 1654 ||||||||||| | || ||||| | ||| || ||||| | ||||||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1655 ATCTTTAAATATTGCGGAGTGATGTCATCAATGACGTTGTATTCCGCTTCATTTGAGTAA 1714 | | ||||| || | |||||||| |||| |||||| || || | |||||| | Sbjct 165527489 A------AGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1715 ACCCTAGAATTGAAATCTAGGTGTCCACTCAAATAATTGTGTGGGCCTAAGGCACGCGCC 1774 || | ||| || | || |||| | || || ||| || || | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1775 CACATTGTCTTTCCCGTCCTCGATTCACCCTCGATGATTAT--ACTTATAGGTCTCTCCG 1832 |||||||| || | ||||| || | ||| | |||||| | |||| |||||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCG 165527318 Query 1833 GCCGCGCAGCGGCATCCCTACCAAAATAATCATCTGCCCATTCTTGCATCTCGTCCGGAA 1892 ||||||||||||| | |||||| || ||||||||||||||||| || || || | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1893 CGTTCGTGAA 1902 | || ||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8188667054832