Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004645.1 Length=2612 Score E Sequences producing significant alignments: (Bits) Value seq16 140 5e-30 seq11 107 3e-20 seq13 95.1 2e-16 >seq16 Length=188620566 Score = 140 bits (154), Expect = 5e-30 Identities = 213/302 (71%), Gaps = 10/302 (3%) Strand=Plus/Minus Query 1595 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAA 1654 |||| || |||||||| |||| || || || || | |||||||||||| || || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1655 TCAATTCTTTCCAATGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTAT 1714 ||||| ||||| || |||| |||| || |||| ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAAC------ATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1715 ACTCGGCATCGTTCGAGAAAACCCTAGAATTGAAATCAAGGTGCCCACTGATATAGTTAT 1774 | || ||||||| ||||||||| ||| ||| || || | | ||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1775 GACGCCCTAGGGCACGAGCCCACATTGTCTTGCCGGTTCTAGAATCACCCTCTACTATTA 1834 | | || | | | |||||||||||||| |||||||| |||||||| || | ||||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1835 T--ACTTATATTTCTATATGGCCGCGCAGCGGAACCCTTATTAAAATAATCATCAGCCCA 1892 | ||| | ||| |||| || | |||| | |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1893 TT 1894 || Sbjct 2249041 TT 2249040 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 250/372 (67%), Gaps = 20/372 (5%) Strand=Plus/Minus Query 1555 CCCTCGCCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTT 1614 ||| | ||||| ||||| |||| ||||| || || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1615 CCATATTTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTT 1674 || ||||| |||| || ||||| | || || || ||||| || |||||||| ||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1675 AGCTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAA 1734 | |||||| || | | ||||||||||| ||| || || || | ||| ||||| Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1735 ACCCTAGAATTGAAATCAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCC 1794 || | ||| || | || |||| || |||||||| | || | | | ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1795 CACATTGTCTTGCCGGTTCTAGAATCACCCTCTACTATTAT--ACTTATATTTCTATATG 1852 |||||||| |||| || || |||| ||| | || ||| | |||| | || || | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTC-AT-CG 165527318 Query 1853 GCCGCGCAGCGGAACCCTT----ATTAAAATAATCATCAGCCCATTCCTGTAACTCTTCT 1908 |||||||||||| ||| | ||| || ||| |||||||| || | |||||| Sbjct 165527317 GCCGCGCAGCGG----CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCT 165527262 Query 1909 GGAAC--TAGTG 1918 || || ||||| Sbjct 165527261 GGTACATTAGTG 165527250 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 245/366 (67%), Gaps = 18/366 (5%) Strand=Plus/Plus Query 1561 CCTGGATTGCACAGCACGATTGACGGGATCCCACCTTTAATTTGAACCGGCTTTCCATAT 1620 ||||| ||||| || | ||||| || || || ||||| | || ||||| | ||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1621 TTACAGTTGGATTGCCAGTCTCTCTGGGCCCCAATCAATTCTTTCCAATGCTTTAGCTTT 1680 || ||||| || ||||| | | || || ||||| || |||||||| ||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1681 AGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAAC--CC 1738 |||||| || | | ||||||||||| ||| || || | ||||| ||||| || Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1739 TAGAATTGAAATCAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCCACA 1798 | |||| || | || |||| | |||||||| || | | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1799 TTGTCTTGCCGGTTCTAGAATCACCCTCTACTATTAT--ACTTATATTTCTATATGGCCG 1856 |||| || || || || ||||||| |||| ||||| |||| | || || ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTC-AT-CGGCCG 89851492 Query 1857 CGCAGCGGAACCCTTATT--AAAATAATCATCAGCCCATTCCTGTAACTCTTCTGGAAC- 1913 |||||||| | || | ||| || ||| ||||||| || | |||||||| || Sbjct 89851493 CGCAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1914 -TAGTG 1918 ||||| Sbjct 89851551 TTAGTG 89851556 Score = 78.8 bits (86), Expect = 2e-11 Identities = 168/247 (68%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 1676 GCTTTAGGTATTGCGGAGCGACGTCATCGATGACGTTATACTCGGCATCGTTCGAGAAAA 1735 |||| | |||||| || | | ||||||||||| ||| || || || | ||| ||||| | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1736 CCCTAGAATTGAAATCAAGGTGCCCACTGATATAGTTATGACGCCCTAGGGCACGAGCCC 1795 | | |||| || | |||| || || |||||||| | || | || | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTGCC-ACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1796 ACATTGTCTTGCCGGTTCTAGAATCACCCTCTACTATTATACTTATATT--TCTATATGG 1853 ||||||| ||||| ||||| |||| ||| |||| || |||| | || ||| || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGAT--TACTGACTTTGGTCTCACCGG 172134059 Query 1854 CCGCGCAGCGGAACCCTTATTAAAATAATCATCAGCCCATTCCTGTAACTCTTCTGGAAC 1913 ||| ||||||| || ||| || ||| |||||||| || | |||||| | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1914 --TAGTG 1918 ||||| Sbjct 172134120 ATTAGTG 172134126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8249466067744