Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004647.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-17 seq11 96.9 6e-17 seq16 77.0 6e-11 >seq13 Length=197258317 Score = 98.7 bits (108), Expect = 2e-17 Identities = 204/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1691 CCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTAT 1750 ||||| |||||||| | || || || ||||||||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1751 TTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAAATAA 1810 ||| || ||||| | ||| || || || |||||||| ||||||| || || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1811 TGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACAC-TCTTGGGCT 1869 || || | ||||| |||| ||| || |||| ||||| | || | || || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1870 T-AAGTCCAAATGGCCGCACAAGTAATTGTGTGGGCCGATGGACCTAGCCCACATTGTTT 1928 | | ||||| ||| || || | ||| || ||| || | || || ||||||||||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1929 TGCCCGTACGACTATCACCCTCAACAATAATTCCTATGGGTCTTATAGGCCGCGCAGCGG 1988 | || || | ||||| || | || ||| | ||||| || ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1989 C 1989 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 203/301 (67%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1691 CCTGGATTGCATAGGAATATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTAT 1750 ||||| |||||||| | || || || ||||||||||| | || |||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1751 TTG--GTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAAAT 1808 ||| ||| || |||| | | ||| || || || |||||||| ||||| | || | Sbjct 165527543 TTGCAGTAAGACT--GCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1809 AATGCGGATCGACATCATCAATGACGTTATACCATGCGTCATTTGAATACACTCTTGGGC 1868 | || || | ||||| |||| ||| || |||| ||||| | ||| || | Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1869 TTAAGTCCAAATGGCCGCACAAGTAATTGTGTGGGCCGATGGACCTAGCCCACATTGTTT 1928 | ||||| ||| || || | ||| || ||| || | || || ||||||||||||| Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1929 TGCCCGTACGACTATCACCCTCAACAATAATTCCTATGGGTCTTATAGGCCGCGCAGCGG 1988 ||| || | || ||| | | || || | ||||| || ||||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 Query 1989 C 1989 | Sbjct 165527305 C 165527305 >seq16 Length=188620566 Score = 77.0 bits (84), Expect = 6e-11 Identities = 161/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 1725 CTTTAATTTGAACTGGCTTTCCGTATTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCA 1784 |||| || ||||| || |||| ||| ||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1785 TGAACTCTTTAAAGTGCTTCAAATAATGCGGATCGACATCATCAATGACGTTATA--CCA 1842 || || || |||| || ||| | || || | || | |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1843 TGCGTCATTTGAATACACTCTTGGGCTTAAGTCCAAATGGCCGCACAAGTAATTGTGTGG 1902 | || || || | || | || | ||||| |||| || | || ||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1903 GCCGATGGACCTAGCCCACATTGTTTTGCCCGTACGACTATCACCCTCAACAATAATT 1960 || | || || ||||||||||| || || || | |||||| |||| || ||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8710258586656