Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004648.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq16 104 4e-19 seq13 87.8 3e-14 >seq16 Length=188620566 Score = 104 bits (114), Expect = 4e-19 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 1721 CTTTAATTTGAATTGGCTTCCCGTACTT--AGTGTTGCTTTGCCAGTCCCTTTGGGCCCC 1778 |||| || |||| || || | |||||| | | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACT-TTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1779 CATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCA 1838 | ||||| || |||| |||| | | || || | ||||| |||||| |||||||| Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1839 CGCGTCATTGCTGTACACCTTTGGACTCAGATCTAGATGACCGCACAGATAATTATGTGG 1898 | | || || | | ||| | ||| ||| |||| || ||| | | |||||||||| Sbjct 2249215 CACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1899 GCCCAACGAACGGGCCCACATTGTCTTTCCTGT 1931 ||||| || | ||||||||||||||||| || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGT 2249123 >seq13 Length=197258317 Score = 87.8 bits (96), Expect = 3e-14 Identities = 233/350 (67%), Gaps = 6/350 (2%) Strand=Plus/Plus Query 2232 TCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCAATCGAGGGTGTCTCCGTCCTTGTC 2291 ||| | |||| |||| | |||||||| ||||| |||| || ||||| || | Sbjct 172134321 TCTGGTAGATGTTCCATGTTTCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTG 172134380 Query 2292 GATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGC 2351 ||||| |||| | | ||||||||||| ||| |||| ||||| || | | Sbjct 172134381 CATGTATCTTCTGACAAAGAAACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTC 172134440 Query 2352 TGACCTGGTTGGG-GATACCAAGTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTT 2410 ||| | ||||| ||| | ||| |||||||| ||| | || | | ||||| || Sbjct 172134441 AGACGTATTTGGGTGAT-TGAGGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTT 172134499 Query 2411 CGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTT 2470 | | ||| || | || || |||||||| | | |||||||| || ||| ||||||| Sbjct 172134500 CCATCTGCATCAAAACATGAAGATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAG 172134559 Query 2471 TGATATAT-TTCTTGTTGGTTG-GGGTGTT--TAGGTTTTGTAATTGGGAAAGTGCATCT 2526 ||||||| | |||| | | || || || ||| || | ||| ||| || | Sbjct 172134560 CGATATATATACTTGATCGCTGAAGGAATTGGTAGAACTTTCAGTTGTTCAAGATAATAT 172134619 Query 2527 TCCTTAGTGAGAGAGCACTGTGGGTATGTGAGGAAGTAATTTTTGGCATT 2576 || || | | | |||| | ||||||||||| |||||| || |||||||| Sbjct 172134620 TCTTTGGATACATAGCATTTTGGGTATGTGATGAAGTAGTTCTTGGCATT 172134669 Score = 84.2 bits (92), Expect = 4e-13 Identities = 202/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1687 CCTGGATTGCAGAGGAAGATAGTTGGGATGCCACCTTTAATTTGAATTGGCTTCCCGTAC 1746 ||||| ||||| || | ||| ||||| ||||| ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1747 TTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAG 1806 || ||| ||||| | ||| || || || || ||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1807 TGGGGATCAACGTCATCAATGACGTTATACCACGCGTCATTGCTGTACACCTTTGGAC-- 1864 || || | |||||| |||| ||| || |||| || | | || ||| Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1865 TCAGATCTAGATGACCGCACAGATAATTATGTGGGCCCAACGAACGGGCCCACATTGTCT 1924 | || || | |||||| || | || |||||| ||||| || | ||||||||||| | Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1925 TTCCTGTAC--GACTCTCTCCCTCTATGACAATACTATTGGGTCTCCAAGGCCGCGCAGC 1982 | ||||| | || || || ||||||| || || |||||| ||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACT--TTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 1983 GGC 1985 ||| Sbjct 89851499 GGC 89851501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703858690560