Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004650.1 Length=2828 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 6e-17 seq13 91.5 3e-15 >seq11 Length=168460249 Score = 96.9 bits (106), Expect = 6e-17 Identities = 206/306 (67%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 1759 CCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTT 1818 ||| ||||||| ||||| || | ||| || || || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1819 CCGTATTTACAGTTGGATTGCCAGTCCTTC--TGGGCCCCCATGAATTCCTTAAAGTGCT 1876 |||||||| |||| || ||||| | ||| || || || || || || || ||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAAT--TTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1877 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTT 1936 | | |||||| || | |||||| |||| ||| || ||| |||| | | |||| Sbjct 165527491 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTT 165527432 Query 1937 TTGGGCTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATA 1996 || | | | || | ||| ||||| | || || || |||||||| || ||||| | Sbjct 165527431 TTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACA 165527372 Query 1997 CTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGGTCTATCCGGCCGCG 2056 |||||||| | | ||| |||| || | | || | ||||| |||||||| Sbjct 165527371 TTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCG 165527312 Query 2057 CAGCGG 2062 |||||| Sbjct 165527311 CAGCGG 165527306 >seq13 Length=197258317 Score = 91.5 bits (100), Expect = 3e-15 Identities = 203/302 (67%), Gaps = 2/302 (1%) Strand=Plus/Plus Query 1763 CTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGT 1822 ||||||| ||||| || | ||| || || || || ||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1823 ATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGT 1882 |||| ||||| || ||||| | | || || || || || || || ||||||| | || Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1883 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTTTGGG- 1941 |||| || | |||||| |||| ||| || | | ||| | | |||||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1942 CTT-AGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGT 2000 ||| || || | ||| ||||| | || || || |||||||| || ||||| | ||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 2001 TTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGGTCTATCCGGCCGCGCAGC 2060 ||| ||| | ||| | ||| || | || || | ||||| |||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 2061 GG 2062 || Sbjct 89851499 GG 89851500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8937450630360