Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004651.1 Length=2714 Score E Sequences producing significant alignments: (Bits) Value seq13 80.6 5e-12 >seq13 Length=197258317 Score = 80.6 bits (88), Expect = 5e-12 Identities = 201/301 (67%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 1654 TCCAGGATTGCAGAGGAATATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1713 ||| || ||||| || | || || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1714 TTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGATA 1773 ||| ||| ||||| | ||| || || || |||||||| |||| || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1774 GTGCGGATCGACGTCATCAATGACGTTGTACCAAGCATCATTATTATACACTTTTGGA-C 1832 || || | |||||| |||| |||||| | | || || | |||||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1833 TTAAA-TCTAAATGGCCACATAGATAATTATGTGGTCCCAATGACCTAGCCCACATCGTC 1891 || | || | ||| ||||||| || |||||| |||||| || || |||||||| || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1892 TTCCCTGTTCTACTATCACCCTCAATTACTAT--ACTTATTGGCCTAAATGGCCGCGCAG 1949 || ||||| || ||||| || || | ||| |||| ||| || | |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCGCGCAG 89851497 Query 1950 C 1950 | Sbjct 89851498 C 89851498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575860768640