Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004654.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq16 86.0 1e-13 >seq16 Length=188620566 Score = 86.0 bits (94), Expect = 1e-13 Identities = 161/234 (69%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 1734 CTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1793 |||| || |||| ||||| | ||||||| || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1794 TGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCCACGTCATCAATCACGTTGTA--CCA 1851 ||||| || |||| |||| | | || || | |||| |||||| ||||| || ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1852 AGCACTGTTGCTGTAAACCTTGGGGCTTAAGTCAAGATGGCCGCAAAGGTAATTGTGATG 1911 || ||| | ||||| | || | ||||| | || || | | ||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATT---ATG 2249159 Query 1912 TGGGCTCAACGACCTGGCCCACATGGTCTTCCCTGTCCTGCTATCCCCTTCAAT 1965 | | ||| || || |||||||| ||||| || || || ||| |||||||| Sbjct 2249158 TCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726258326896