Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_004655.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq13 111 3e-21 seq11 102 1e-18 seq16 93.3 7e-16 seq9 80.6 5e-12 >seq13 Length=197258317 Score = 111 bits (122), Expect = 3e-21 Identities = 208/302 (69%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 1727 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTA 1786 |||||| ||||| || | ||| || || ||||| ||||| | || ||||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1787 CTTTGTA-TTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGAT 1845 |||| | || ||||| | | ||| || || || || ||||| ||||||| | | Sbjct 89851260 -TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1846 AGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGAC 1905 | || || | |||||| |||| |||||| ||||||| | |||| ||| Sbjct 89851319 ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 1906 --TGAGATCCAGGTGTCCACATAAGTAGTTGTGTGGACCCAGAGAGCGGGCCCACATTGT 1963 |||| |||| || ||||||| |||||| ||| |||| ||| | ||||||||||| Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 1964 CTTTCCGGTCCTACTATCGCCCTCGATGACGATACTATTAGGTCTCCATGGCCGCGCAGC 2023 || || ||||| ||| | || |||| || || |||||| ||||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGC 89851498 Query 2024 GG 2025 || Sbjct 89851499 GG 89851500 >seq11 Length=168460249 Score = 102 bits (112), Expect = 1e-18 Identities = 204/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 1727 TCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTGAATTGGCTTCCCGTA 1786 |||||| ||||| || | ||| || || ||||| ||||| | || ||||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1787 CTTTGTATTGCTT-TGCCAGTCTCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGAT 1845 |||| | | ||||| | || ||| || || || || ||||| ||||| | | | Sbjct 165527544 -TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGT 165527486 Query 1846 AGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGAC 1905 | || || | |||||| |||| |||||| |||| ||| | |||| ||| Sbjct 165527485 ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1906 TGAGATCCAGGTGTCCACATAAGTAGTTGTGTGGACCCAGAGAGCGGGCCCACATTGTCT 1965 || | |||| || ||||||| |||||| ||| |||| ||| | ||||||||||| | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1966 TTCCGGTCCTACTATCGCCCTCGATGACGATACTATTAGGTCTCCATGGCCGCGCAGCGG 2025 | | ||||| || || | |||| | || |||||| ||||||||||||| Sbjct 165527365 TGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGG 165527306 >seq16 Length=188620566 Score = 93.3 bits (102), Expect = 7e-16 Identities = 184/267 (69%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 1762 CTTTAATTTGAATTGGCTTCCCGTACTTTGTA--TTGCTTTGCCAGTCTCTTTGGGCCCC 1819 |||| || |||| || || | |||||| | | |||||| ||||||||||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTT-GCACTTTGCTT-GCCAGTCTCTTTGTGCACC 2249276 Query 1820 CATGAATTCTTTGAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTA--C 1877 | ||||| || |||| |||| | | || || | |||| |||||| ||||| || | Sbjct 2249275 AAGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTC 2249216 Query 1878 CAGGCGTCGTTGCTGTAGACCTTTGGACTGAGATCCAGGTGTCCACATAAGTAGTTGTGT 1937 || | ||||| | | ||| | ||| | | || | | |||| ||| || || ||| Sbjct 2249215 CA--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGT 2249158 Query 1938 GGACCCAGAGAGCGGGCCCACATTGTCTTTCCGGTCCTACTATCGCCCTCGATGACGATA 1997 |||| || | |||||||||||||||||||| || ||| || || || | || Sbjct 2249157 CTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATT 2249098 Query 1998 CTATTAGGTCTCCATGGCCGCGCAGCG 2024 | ||||||| |||| || | |||| Sbjct 2249097 GACTGAGGTCTCAATGGGCGTGAAGCG 2249071 >seq9 Length=209865144 Score = 80.6 bits (88), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 1291 GTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGCGCCTTCCTCAGGTTGTGG 1350 ||||| | |||||||| || | ||||||| ||||| ||| ||||||||| | Sbjct 1759649 GTCCATATTTTGAAGTTCAGGTATGCCTTGTGAAGATCCAGCTGCTTTCTCAGGTTGCTG 1759708 Query 1351 TTGAACCGTATCTGGAGTGTGATGATGTCGTGGTTCATGTTCCCTGGCC--TCCTGTCGT 1408 ||||||||||| || ||| ||||| ||| || ||| | | || | | | | || Sbjct 1759709 TTGAACCGTATTTGCAGTTTGATGTAGTCCGTGTCCATCATACACGGTCGTTGCAG--GT 1759766 Query 1409 GGTTGGTGATTTCGAAATAGAGGGGATTTGTTATTTCCCAGGTAAAAACGCCATTCTTGG 1468 | || ||| || ||| ||||| ||||||| ||| | || |||| ||||| | || Sbjct 1759767 GCTTCTTGACTTTGAAGTAGAGAGGATTTGATATCCCGTAGAAGTAAACTCCATTTTGGG 1759826 Query 1469 CTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGG 1510 |||| | |||||||| | | || |||| ||||||||| Sbjct 1759827 CTTGCTGTGCAGTGATTAACTTGCCGGTGCATAAATCCATGG 1759868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8799852930000